We searched for PerR binding sites in the upstream region of orthologous genes using the Position-Specific Scoring Matrix for PerR.
| PerR |
fur |
Bha |
-48..-63 |
TTATAAATAGTATAG |
6.904560 |
| PerR |
fur |
Cac |
-65..-50 |
ATATAATTAGTATGA |
6.086240 |
| PerR |
fur |
Lla |
-98..-113 |
TTAGAATGATTCTAA |
9.754070 |
| PerR |
fur |
Lin |
-38..-23 |
GTATTATGAATATAA |
5.750210 |
| PerR |
fur |
EcZ |
-98..-83 |
TATTAATTATTATCG |
6.157880 |
| PerR |
fur |
Ecs |
-98..-83 |
TATTAATTATTATCG |
6.157880 |
| PerR |
fur |
Hpy |
-84..-99 |
TCATTATTATTTTAA |
5.861980 |
| PerR |
fur |
jHp |
-84..-99 |
TCATTATTATTTTAA |
5.861980 |
| PerR |
fur |
Syn |
-23..-38 |
TGATAATGATTATCG |
9.208070 |
| PerR |
fur |
Nos |
-77..-92 |
TGAGAATATTTATTA |
6.635810 |
| PerR |
hemA |
Bsu |
-79..-64 |
TTATAATTATTATAA |
12.787040 |
| PerR |
hemA |
Bha |
-237..-252 |
GAATTATTATTATAA |
5.967840 |
| PerR |
hemA |
Cac |
-57..-72 |
GTATAATTATACTAA |
5.861980 |
| PerR |
katA |
Bsu |
-63..-78 |
TTATAATTATTATAA |
12.787040 |
| PerR |
katA |
Bha |
-53..-68 |
TGGAAATTTTTATGA |
5.785320 |
| PerR |
katA |
Ype |
-234..-219 |
TTCAAATGATCATAA |
6.092870 |
| PerR |
katA |
Hin |
-10..-25 |
TTGTAAAGTTAATAA |
6.420230 |
| PerR |
katA |
Nme |
-191..-206 |
TTAATATTATTATAA |
8.324020 |
| PerR |
katA |
NmA |
-191..-206 |
TTAATATTATTATAA |
8.324020 |
| PerR |
katA |
Hpy |
-229..-244 |
CTACAATTATTTTTA |
5.725600 |
| PerR |
katA |
jHp |
-12..-27 |
TTGTCATTTTTTTAA |
6.532000 |
| PerR |
mrgA |
Bsu |
-83..-68 |
TTATAATTATTATAA |
12.787040 |
| PerR |
mrgA |
Spy |
-142..-157 |
TTAGAATCATTATCG |
7.952430 |
| PerR |
mrgA |
Mpu |
-66..-81 |
TTAAAATTCTTATAT |
6.310500 |
| PerR |
mrgA |
Ype |
-166..-181 |
TTATAAATAATATAG |
6.904560 |
| PerR |
mrgA |
Hin |
-239..-254 |
TTATAATTTTTAATA |
8.049980 |
| PerR |
mrgA |
Cje |
-109..-94 |
GTATAATGATTTTAA |
8.093850 |
| PerR |
mrgA |
Nos |
-15..-30 |
GAGTAATTATTATTA |
6.330700 |
| PerR |
mrgA |
Fnu |
-135..-150 |
TAATAATTATAAAAA |
5.861980 |
| PerR |
ahpC |
Bsu |
-60..-45 |
TTAGAATTATTATTG |
9.611060 |
| PerR |
ahpC |
Bha |
-100..-115 |
TTATAATTGATATTA |
6.920800 |
| PerR |
ahpC |
Spy |
-208..-223 |
ATATAATTGTTATTA |
7.026660 |
| PerR |
ahpC |
Lin |
-100..-85 |
TTATAATTACTATAA |
10.443400 |
| PerR |
ahpC |
Pae |
-205..-220 |
TTCTCATTATTATTA |
6.920800 |
| PerR |
ahpC |
Ccr |
-75..-60 |
ATAGAAGTTTTATCA |
5.561060 |
| PerR |
ahpC |
Rpr |
-67..-52 |
TTATTATTGTAATAA |
5.980380 |
| PerR |
ahpC |
Rco |
-61..-46 |
TTATTATTGTAATAA |
5.980380 |
| PerR |
ahpC |
Tma |
-55..-40 |
TGAGAATGGATATCA |
5.362690 |
| PerR |
ahpC |
Fnu |
-71..-56 |
TTGTAATGATTACAA |
9.754070 |
| PerR |
perR |
Bha |
-48..-63 |
TTATAAATAGTATAG |
6.904560 |
| PerR |
perR |
Cac |
-65..-50 |
ATATAATTAGTATGA |
6.086240 |
| PerR |
perR |
Lla |
-98..-113 |
TTAGAATGATTCTAA |
9.754070 |
| PerR |
perR |
Lin |
-38..-23 |
GTATTATGAATATAA |
5.750210 |
| PerR |
perR |
EcZ |
-98..-83 |
TATTAATTATTATCG |
6.157880 |
| PerR |
perR |
Ecs |
-98..-83 |
TATTAATTATTATCG |
6.157880 |
| PerR |
perR |
Hpy |
-84..-99 |
TCATTATTATTTTAA |
5.861980 |
| PerR |
perR |
jHp |
-84..-99 |
TCATTATTATTTTAA |
5.861980 |
| PerR |
perR |
Syn |
-23..-38 |
TGATAATGATTATCG |
9.208070 |
| PerR |
perR |
Nos |
-77..-92 |
TGAGAATATTTATTA |
6.635810 |
| PerR |
ykvW |
Bsu |
-167..-182 |
TAATAATTATCATTA |
6.802400 |
| PerR |
ykvW |
Bha |
-206..-191 |
CAATAATTTTTATTA |
6.960640 |
| PerR |
ykvW |
Lla |
-103..-88 |
TTGTAATATTTATAG |
8.039030 |
| PerR |
ykvW |
Spy |
-97..-82 |
TTAGAATGTTTCTAA |
8.763870 |
| PerR |
ykvW |
Lin |
-87..-102 |
CAATAATTATTATAA |
9.354060 |
| PerR |
ykvW |
Pmu |
-45..-30 |
TTATTATTCTTATTG |
5.725600 |
| PerR |
ykvW |
Cje |
-18..-33 |
TTATAATTATAAACA |
7.022960 |
| PerR |
ykvW |
Bbu |
-64..-79 |
TTATATATGTTATAA |
5.980380 |
| PerR |
ykvW |
Syn |
-25..-10 |
TTGTACTGAGTATTA |
6.007210 |
| PerR |
ykvW |
Tma |
-40..-25 |
CTACAATTAGTATAG |
5.933620 |
| PerR |
ykvW |
Fnu |
-72..-87 |
TTATTTTGATTATAT |
5.750210 |