match_sequences

SigD

We searched for SigD binding sites in the upstream region of orthologous genes using the Position-Specific Scoring Matrix for SigD.

Transcription Factor	Regulated gene	organism	position	cis-element	score
SigD	hag	Bsu	-122..-98	`ACAAAATCAGAGACAATCCGATAT`	`7.406780`
SigD	hag	Bha	-139..-112	`TAAACTCCTGTGAAATCGTGTCGATAT`	`10.043090`
SigD	hag	Cac	-106..-79	`TAAAGTGATAAAGAAATGCTCCGATAT`	`10.638140`
SigD	hag	Eco	-60..-33	`TCAAGTCCGGCGGGTCGCTGCCGATAA`	`9.916110`
SigD	hag	EcZ	-60..-33	`TCAAGTCCGGCGGGTCGCTGCCGATAA`	`9.916110`
SigD	hag	Ecs	-60..-33	`TCAAGTCCGGCGGGTCGCTGCCGATAA`	`9.916110`
SigD	hag	Ype	-142..-166	`TAAAAGCTGGGCCATGCCCGGTAT`	`7.679680`
SigD	hag	Pae	-120..-94	`AAAGCTCCGCCGGGAAACGCCGATAA`	`7.659340`
SigD	hag	jHp	-81..-57	`AAAATTTCAAACTTTAACCGATAA`	`7.519220`
SigD	hag	Bme	-131..-107	`TTTATACCTTAGGAATGGCGATAT`	`7.409110`
SigD	hag	Mlo	-164..-188	`TAATTCGAGAAAAATCGCCGATGT`	`8.512180`
SigD	hag	Aae	-63..-37	`AAAACTTTTTTCTTTTCCTCCGATAA`	`7.710470`
SigD	cheV	Bsu	-64..-39	`CACTTTTTACAAATTACGCCGATAT`	`7.618130`
SigD	cheV	Bha	-61..-35	`TCAAAATGACGGAAAAAGGACGATAA`	`7.416160`
SigD	cheV	Mtu	-104..-77	`TTCACTCTGGCCTTGTTGTGCCCATAT`	`7.948630`
SigD	cheV	Ype	-16..-42	`TTAACAACAGAATATACTACCGATAA`	`8.329370`
SigD	cheV	Sty	-78..-54	`TCAAATTGTGATTGAAGCCGACAT`	`8.208490`
SigD	cheV	Vch	-74..-50	`TTCAAGCCATTCCGTTGCCGATAC`	`7.938290`
SigD	cheV	Pae	-52..-26	`GAAACACAGCAGTATATCGCCGGTAT`	`7.603330`
SigD	cheV	Rso	-74..-47	`TCAAGAAATGTTGCGGGCGGCCGATGT`	`8.208490`
SigD	cheV	Bme	-192..-220	`TAAAAACAATATGCTTCCATGCCGAGAG`	`7.717770`
SigD	cheV	Mlo	-93..-67	`TTCAGCGAAGACGAGGCGGCCGAGAT`	`7.721180`
SigD	cheV	Ccr	-100..-74	`TCATTCGTTAGCTATGCCGCCGATAT`	`9.916110`
SigD	cheV	Syn	-155..-127	`GAAAGCACCCAGAATATTTGGCCGTTAT`	`8.056460`
SigD	cheV	Nos	-60..-84	`TCAAAATCATCAATTTGGCGATAT`	`8.510060`
SigD	cheV	Bsu	-64..-39	`CACTTTTTACAAATTACGCCGATAT`	`7.618130`
SigD	cheV	Bha	-61..-35	`TCAAAATGACGGAAAAAGGACGATAA`	`7.416160`
SigD	cheV	Mtu	-104..-77	`TTCACTCTGGCCTTGTTGTGCCCATAT`	`7.948630`
SigD	cheV	Ype	-16..-42	`TTAACAACAGAATATACTACCGATAA`	`8.329370`
SigD	cheV	Sty	-78..-54	`TCAAATTGTGATTGAAGCCGACAT`	`8.208490`
SigD	cheV	Vch	-74..-50	`TTCAAGCCATTCCGTTGCCGATAC`	`7.938290`
SigD	cheV	Pae	-52..-26	`GAAACACAGCAGTATATCGCCGGTAT`	`7.603330`
SigD	cheV	Rso	-74..-47	`TCAAGAAATGTTGCGGGCGGCCGATGT`	`8.208490`
SigD	cheV	Bme	-192..-220	`TAAAAACAATATGCTTCCATGCCGAGAG`	`7.717770`
SigD	cheV	Mlo	-93..-67	`TTCAGCGAAGACGAGGCGGCCGAGAT`	`7.721180`
SigD	cheV	Ccr	-100..-74	`TCATTCGTTAGCTATGCCGCCGATAT`	`9.916110`
SigD	cheV	Syn	-155..-127	`GAAAGCACCCAGAATATTTGGCCGTTAT`	`8.056460`
SigD	cheV	Nos	-60..-84	`TCAAAATCATCAATTTGGCGATAT`	`8.510060`
SigD	yvyC	Bsu	-58..-32	`TAATCTTATCTCGACTTAGTCGATAT`	`8.881470`
SigD	yvyC	Bha	-66..-39	`TAAAGTTTAGGAATGAGATACCGATAT`	`10.446890`
SigD	yvyC	Hpy	-92..-68	`ACAAATCGTTTTTATTGCCGATAT`	`9.311680`
SigD	yvyC	jHp	-91..-67	`AACAAATCGTCTTTTTGCCGATAT`	`9.780270`
SigD	yvyC	Aae	-63..-37	`AAAACTTTTTTCTTTTCCTCCGATAA`	`7.710470`
SigD	tlpA	Bsu	-55..-31	`TATTTACCCATTTCCAGCCGATAT`	`9.771060`
SigD	tlpA	Bha	-58..-34	`AAAAATTTCCTCATGAACCGATAA`	`7.519220`
SigD	tlpA	Cac	-27..-51	`TAAATATATAAACATTATCGATAT`	`7.946940`
SigD	tlpA	Lin	-140..-116	`ATATCACCCATTTTACGCCGATAT`	`8.659470`
SigD	tlpA	Eco	-76..-49	`TAAAGATAACCGCAGCGGGGCCGACAT`	`9.673800`
SigD	tlpA	EcZ	-76..-49	`TAAAGATAACCGCAGCGGGGCCGACAT`	`9.673800`
SigD	tlpA	Ecs	-57..-31	`AAAGTTTCCCCCTTCCTTGCCGATAA`	`7.659340`
SigD	tlpA	Ype	-92..-66	`AAAGTTCCCCTTTTTAGTGCCGATAA`	`7.659340`
SigD	tlpA	Sty	-234..-206	`CAAGCGGGCCAGTCCCCTGAGCCGATAT`	`7.820440`
SigD	tlpA	Vch	-49..-22	`TTAAGTGGCGTGATCTTAAGTCGATAA`	`7.925570`
SigD	tlpA	Pae	-179..-153	`TCAATCGACCCGGAGCATGCCGAAAA`	`7.500000`
SigD	tlpA	Rso	-88..-60	`TCAAGGTCTGCGCGCAAGTTGCCGATAG`	`9.121700`
SigD	tlpA	Cje	-181..-156	`TAAATTTTTTAAATTATAACGATAT`	`7.946940`
SigD	tlpA	Ccr	-151..-124	`TAAACCATCCCCTCGTTCCCACGATAT`	`8.048970`
SigD	tlpA	Syn	-122..-146	`AAAAACTTTGGGGAGGCCCGATAA`	`7.621250`
SigD	yjbJ	Bsu	-81..-57	`TTCAGTTCTTTGCTCAGCCAATAT`	`8.016350`
SigD	yjbJ	Nme	-167..-143	`TTCAAACAGATTGCCTGCCGATAT`	`10.590420`
SigD	yjbJ	NmA	-166..-142	`TTCAAACAGATTGCCTGCCGATAT`	`10.590420`
SigD	yjbJ	Rso	-110..-82	`TCAAGCCATCCCCGGGGATGGCCGATAA`	`9.916110`
SigD	yjbJ	Rco	-177..-150	`TAATTTGTTGGATATGGTACCCGATAT`	`9.387300`
SigD	motA	Bsu	-68..-41	`TAAAGTTCCGGGCACCAAAACCGATAT`	`10.446890`
SigD	motA	Cac	-40..-66	`TAAAATTTATATATGTATTCCAATAT`	`8.064070`
SigD	motA	Pae	-85..-58	`TATAGTCTTGCGGCTAGCAACCGATAA`	`7.674910`
SigD	motA	Ccr	-43..-19	`TTAATCGGCATGATGCGCCGATAA`	`10.425520`
SigD	motA	Aae	-38..-12	`TAAATTTTAAAAAGGAAATCCGATAA`	`9.476520`
SigD	yoaH	Bsu	-55..-31	`TATTTACCCATTTCCAGCCGATAT`	`9.771060`
SigD	yoaH	Bha	-58..-34	`AAAAATTTCCTCATGAACCGATAA`	`7.519220`
SigD	yoaH	Cac	-27..-51	`TAAATATATAAACATTATCGATAT`	`7.946940`
SigD	yoaH	Lin	-140..-116	`ATATCACCCATTTTACGCCGATAT`	`8.659470`
SigD	yoaH	Eco	-76..-49	`TAAAGATAACCGCAGCGGGGCCGACAT`	`9.673800`
SigD	yoaH	EcZ	-76..-49	`TAAAGATAACCGCAGCGGGGCCGACAT`	`9.673800`
SigD	yoaH	Ecs	-57..-31	`AAAGTTTCCCCCTTCCTTGCCGATAA`	`7.659340`
SigD	yoaH	Ype	-92..-66	`AAAGTTCCCCTTTTTAGTGCCGATAA`	`7.659340`
SigD	yoaH	Sty	-234..-206	`CAAGCGGGCCAGTCCCCTGAGCCGATAT`	`7.820440`
SigD	yoaH	Vch	-49..-22	`TTAAGTGGCGTGATCTTAAGTCGATAA`	`7.925570`
SigD	yoaH	Pae	-179..-153	`TCAATCGACCCGGAGCATGCCGAAAA`	`7.500000`
SigD	yoaH	Rso	-88..-60	`TCAAGGTCTGCGCGCAAGTTGCCGATAG`	`9.121700`
SigD	yoaH	Cje	-181..-156	`TAAATTTTTTAAATTATAACGATAT`	`7.946940`
SigD	yoaH	Ccr	-151..-124	`TAAACCATCCCCTCGTTCCCACGATAT`	`8.048970`
SigD	yoaH	Syn	-122..-146	`AAAAACTTTGGGGAGGCCCGATAA`	`7.621250`
SigD	mcpB	Bsu	-55..-31	`TATTTACCCATTTCCAGCCGATAT`	`9.771060`
SigD	mcpB	Bha	-58..-34	`AAAAATTTCCTCATGAACCGATAA`	`7.519220`
SigD	mcpB	Cac	-27..-51	`TAAATATATAAACATTATCGATAT`	`7.946940`
SigD	mcpB	Lin	-140..-116	`ATATCACCCATTTTACGCCGATAT`	`8.659470`
SigD	mcpB	Eco	-76..-49	`TAAAGATAACCGCAGCGGGGCCGACAT`	`9.673800`
SigD	mcpB	EcZ	-76..-49	`TAAAGATAACCGCAGCGGGGCCGACAT`	`9.673800`
SigD	mcpB	Ecs	-57..-31	`AAAGTTTCCCCCTTCCTTGCCGATAA`	`7.659340`
SigD	mcpB	Ype	-92..-66	`AAAGTTCCCCTTTTTAGTGCCGATAA`	`7.659340`
SigD	mcpB	Sty	-234..-206	`CAAGCGGGCCAGTCCCCTGAGCCGATAT`	`7.820440`
SigD	mcpB	Vch	-49..-22	`TTAAGTGGCGTGATCTTAAGTCGATAA`	`7.925570`
SigD	mcpB	Pae	-179..-153	`TCAATCGACCCGGAGCATGCCGAAAA`	`7.500000`
SigD	mcpB	Rso	-88..-60	`TCAAGGTCTGCGCGCAAGTTGCCGATAG`	`9.121700`
SigD	mcpB	Cje	-181..-156	`TAAATTTTTTAAATTATAACGATAT`	`7.946940`
SigD	mcpB	Ccr	-151..-124	`TAAACCATCCCCTCGTTCCCACGATAT`	`8.048970`
SigD	mcpB	Syn	-122..-146	`AAAAACTTTGGGGAGGCCCGATAA`	`7.621250`
SigD	epr	Bsu	-59..-34	`TAATCTCTCTTTTTTTCTCCGATAT`	`9.476520`
SigD	epr	Bha	-98..-73	`AAATACGACAAAATTCGACCGATAT`	`7.519220`
SigD	epr	Mtu	-128..-152	`TCCATTTCGTTGGTAGCCCGATAT`	`8.086890`
SigD	epr	Dra	-167..-143	`TACATGAAGATGCCGTCCCGATAT`	`9.552200`
SigD	mcpA	Bsu	-55..-31	`TATTTACCCATTTCCAGCCGATAT`	`9.771060`
SigD	mcpA	Bha	-58..-34	`AAAAATTTCCTCATGAACCGATAA`	`7.519220`
SigD	mcpA	Cac	-27..-51	`TAAATATATAAACATTATCGATAT`	`7.946940`
SigD	mcpA	Lin	-140..-116	`ATATCACCCATTTTACGCCGATAT`	`8.659470`
SigD	mcpA	Eco	-76..-49	`TAAAGATAACCGCAGCGGGGCCGACAT`	`9.673800`
SigD	mcpA	EcZ	-76..-49	`TAAAGATAACCGCAGCGGGGCCGACAT`	`9.673800`
SigD	mcpA	Ecs	-57..-31	`AAAGTTTCCCCCTTCCTTGCCGATAA`	`7.659340`
SigD	mcpA	Ype	-92..-66	`AAAGTTCCCCTTTTTAGTGCCGATAA`	`7.659340`
SigD	mcpA	Sty	-234..-206	`CAAGCGGGCCAGTCCCCTGAGCCGATAT`	`7.820440`
SigD	mcpA	Vch	-49..-22	`TTAAGTGGCGTGATCTTAAGTCGATAA`	`7.925570`
SigD	mcpA	Pae	-179..-153	`TCAATCGACCCGGAGCATGCCGAAAA`	`7.500000`
SigD	mcpA	Rso	-88..-60	`TCAAGGTCTGCGCGCAAGTTGCCGATAG`	`9.121700`
SigD	mcpA	Cje	-181..-156	`TAAATTTTTTAAATTATAACGATAT`	`7.946940`
SigD	mcpA	Ccr	-151..-124	`TAAACCATCCCCTCGTTCCCACGATAT`	`8.048970`
SigD	mcpA	Syn	-122..-146	`AAAAACTTTGGGGAGGCCCGATAA`	`7.621250`
SigD	tlpC	Bsu	-55..-31	`TATTTACCCATTTCCAGCCGATAT`	`9.771060`
SigD	tlpC	Bha	-58..-34	`AAAAATTTCCTCATGAACCGATAA`	`7.519220`
SigD	tlpC	Cac	-27..-51	`TAAATATATAAACATTATCGATAT`	`7.946940`
SigD	tlpC	Lin	-140..-116	`ATATCACCCATTTTACGCCGATAT`	`8.659470`
SigD	tlpC	Eco	-76..-49	`TAAAGATAACCGCAGCGGGGCCGACAT`	`9.673800`
SigD	tlpC	EcZ	-76..-49	`TAAAGATAACCGCAGCGGGGCCGACAT`	`9.673800`
SigD	tlpC	Ecs	-57..-31	`AAAGTTTCCCCCTTCCTTGCCGATAA`	`7.659340`
SigD	tlpC	Ype	-92..-66	`AAAGTTCCCCTTTTTAGTGCCGATAA`	`7.659340`
SigD	tlpC	Sty	-234..-206	`CAAGCGGGCCAGTCCCCTGAGCCGATAT`	`7.820440`
SigD	tlpC	Vch	-49..-22	`TTAAGTGGCGTGATCTTAAGTCGATAA`	`7.925570`
SigD	tlpC	Pae	-179..-153	`TCAATCGACCCGGAGCATGCCGAAAA`	`7.500000`
SigD	tlpC	Rso	-88..-60	`TCAAGGTCTGCGCGCAAGTTGCCGATAG`	`9.121700`
SigD	tlpC	Cje	-181..-156	`TAAATTTTTTAAATTATAACGATAT`	`7.946940`
SigD	tlpC	Ccr	-151..-124	`TAAACCATCCCCTCGTTCCCACGATAT`	`8.048970`
SigD	tlpC	Syn	-122..-146	`AAAAACTTTGGGGAGGCCCGATAA`	`7.621250`
SigD	flgB	Bsu	-258..-232	`TCAAAAAGTTTCAAAAATGCCGAAAA`	`7.500000`
SigD	flgB	Spy	-134..-109	`AAAATTTCAAAATTTTTGCCGATTT`	`7.907750`
SigD	flgB	Pae	-190..-214	`AAAAAGGCCCGATATCGTCGATAT`	`8.277040`
SigD	lytD	Bsu	-70..-45	`AAATGAAGCATGCGCGTGCCGATAA`	`8.453750`
SigD	lytD	Sty	-53..-25	`TACAAAGCGCTATGCTTAACGCTGATAT`	`8.139420`
SigD	lytD	Sme	-117..-89	`GAAAGGATCAGAACGCCATGGCCGAAAT`	`8.056460`
SigD	yfmT	Bsu	-56..-32	`TAGAAAAAATAGATTCGCCCATAT`	`7.986470`
SigD	yfmT	Bha	-58..-34	`AAAAATTTCCTCATGAACCGATAA`	`7.519220`
SigD	yfmT	Spy	-23..-51	`TAATCTTATTATATCACTTTTCCGATAT`	`9.476520`
SigD	yfmT	Mtu	-28..-54	`TCATCGATTGGACACTTGTCCGATAT`	`8.011210`
SigD	yfmT	MtC	-28..-54	`TCATCGATTGGACACTTGTCCGATAT`	`8.011210`
SigD	yfmT	Eco	-229..-205	`TTAATGTTATATCTGCCCCGATAA`	`8.431400`
SigD	yfmT	Ype	-108..-135	`TTATTTTCTCATTCTTACGGCCGATTT`	`7.556280`
SigD	yfmT	Sty	-39..-63	`TAAAACCAAGACAGATTCCGATCT`	`8.465000`
SigD	yfmT	Nos	-98..-71	`TAAATCGCTTATGGGTGGTGACGATAA`	`8.881470`
SigD	dltA	Bsu	-292..-266	`TCATTTTCAAAAACATACGCCGATAT`	`9.916110`
SigD	dltA	Spy	-90..-115	`TAAAATAAAATTGTCTTGCCAATAA`	`8.807350`
SigD	dltA	Nos	-87..-63	`TTAAACGCATATAAACACCGATAA`	`8.329370`
SigD	mcpC	Bsu	-55..-31	`TATTTACCCATTTCCAGCCGATAT`	`9.771060`
SigD	mcpC	Bha	-58..-34	`AAAAATTTCCTCATGAACCGATAA`	`7.519220`
SigD	mcpC	Cac	-27..-51	`TAAATATATAAACATTATCGATAT`	`7.946940`
SigD	mcpC	Lin	-140..-116	`ATATCACCCATTTTACGCCGATAT`	`8.659470`
SigD	mcpC	Eco	-76..-49	`TAAAGATAACCGCAGCGGGGCCGACAT`	`9.673800`
SigD	mcpC	EcZ	-76..-49	`TAAAGATAACCGCAGCGGGGCCGACAT`	`9.673800`
SigD	mcpC	Ecs	-57..-31	`AAAGTTTCCCCCTTCCTTGCCGATAA`	`7.659340`
SigD	mcpC	Ype	-92..-66	`AAAGTTCCCCTTTTTAGTGCCGATAA`	`7.659340`
SigD	mcpC	Sty	-234..-206	`CAAGCGGGCCAGTCCCCTGAGCCGATAT`	`7.820440`
SigD	mcpC	Vch	-49..-22	`TTAAGTGGCGTGATCTTAAGTCGATAA`	`7.925570`
SigD	mcpC	Pae	-179..-153	`TCAATCGACCCGGAGCATGCCGAAAA`	`7.500000`
SigD	mcpC	Rso	-88..-60	`TCAAGGTCTGCGCGCAAGTTGCCGATAG`	`9.121700`
SigD	mcpC	Cje	-181..-156	`TAAATTTTTTAAATTATAACGATAT`	`7.946940`
SigD	mcpC	Ccr	-151..-124	`TAAACCATCCCCTCGTTCCCACGATAT`	`8.048970`
SigD	mcpC	Syn	-122..-146	`AAAAACTTTGGGGAGGCCCGATAA`	`7.621250`
SigD	tlpB	Bsu	-55..-31	`TATTTACCCATTTCCAGCCGATAT`	`9.771060`
SigD	tlpB	Bha	-58..-34	`AAAAATTTCCTCATGAACCGATAA`	`7.519220`
SigD	tlpB	Cac	-27..-51	`TAAATATATAAACATTATCGATAT`	`7.946940`
SigD	tlpB	Lin	-140..-116	`ATATCACCCATTTTACGCCGATAT`	`8.659470`
SigD	tlpB	Eco	-76..-49	`TAAAGATAACCGCAGCGGGGCCGACAT`	`9.673800`
SigD	tlpB	EcZ	-76..-49	`TAAAGATAACCGCAGCGGGGCCGACAT`	`9.673800`
SigD	tlpB	Ecs	-57..-31	`AAAGTTTCCCCCTTCCTTGCCGATAA`	`7.659340`
SigD	tlpB	Ype	-92..-66	`AAAGTTCCCCTTTTTAGTGCCGATAA`	`7.659340`
SigD	tlpB	Sty	-234..-206	`CAAGCGGGCCAGTCCCCTGAGCCGATAT`	`7.820440`
SigD	tlpB	Vch	-49..-22	`TTAAGTGGCGTGATCTTAAGTCGATAA`	`7.925570`
SigD	tlpB	Pae	-179..-153	`TCAATCGACCCGGAGCATGCCGAAAA`	`7.500000`
SigD	tlpB	Rso	-88..-60	`TCAAGGTCTGCGCGCAAGTTGCCGATAG`	`9.121700`
SigD	tlpB	Cje	-181..-156	`TAAATTTTTTAAATTATAACGATAT`	`7.946940`
SigD	tlpB	Ccr	-151..-124	`TAAACCATCCCCTCGTTCCCACGATAT`	`8.048970`
SigD	tlpB	Syn	-122..-146	`AAAAACTTTGGGGAGGCCCGATAA`	`7.621250`