TnrA

We searched for TnrA binding sites in the upstream region of orthologous genes using the Position-Specific Scoring Matrix for TnrA.

Transcription Factor Regulated gene organism position cis-element score
TnrA nasB Bsu -135..-152 ATTCAGAAAATGTAAAA 5.936370
TnrA nasB Ype -128..-111 TATCAAAAAAGCTTAAA 6.070440
TnrA nasB Aae -24..-41 TTGCAAAAAACGTGCCA 6.244730
TnrA ycsF Bsu -151..-168 CAGAATAAAACCTGCCA 5.765370
TnrA ycsF Bha -41..-24 TGGAAAAAGAATTGACA 7.613940
TnrA yccC Bsu -84..-67 TGAGAGAAAAGCTGACT 9.508330
TnrA yccC Sty -84..-67 AGGCAAAAAATTTAAAA 5.727880
TnrA gltA Bsu -34..-51 GGTCATAAAATCTAACA 12.196810
TnrA gltA Mtu -187..-204 CGTAAAACGATATGACA 6.221760
TnrA gltA EcZ -255..-272 CGTTAGAGAAACAGCCA 5.860740
TnrA gltA Ecs -255..-272 CGTTAGAGAAACAGCCA 5.860740
TnrA gltA Ype -67..-84 CGTCTAGAAAGCTTCCA 6.091710
TnrA gltA Syn -175..-158 TGTGAAGAATAGTTACA 6.642700
TnrA gltA Nos -43..-60 TGTGAGAAAAATTGCTA 7.044340
TnrA gltA Bsu -34..-51 GGTCATAAAATCTAACA 12.196810
TnrA gltA Mtu -187..-204 CGTAAAACGATATGACA 6.221760
TnrA gltA EcZ -255..-272 CGTTAGAGAAACAGCCA 5.860740
TnrA gltA Ecs -255..-272 CGTTAGAGAAACAGCCA 5.860740
TnrA gltA Ype -67..-84 CGTCTAGAAAGCTTCCA 6.091710
TnrA gltA Syn -175..-158 TGTGAAGAATAGTTACA 6.642700
TnrA gltA Nos -43..-60 TGTGAGAAAAATTGCTA 7.044340
TnrA gltA Bsu -34..-51 GGTCATAAAATCTAACA 12.196810
TnrA gltA Mtu -187..-204 CGTAAAACGATATGACA 6.221760
TnrA gltA EcZ -255..-272 CGTTAGAGAAACAGCCA 5.860740
TnrA gltA Ecs -255..-272 CGTTAGAGAAACAGCCA 5.860740
TnrA gltA Ype -67..-84 CGTCTAGAAAGCTTCCA 6.091710
TnrA gltA Syn -175..-158 TGTGAAGAATAGTTACA 6.642700
TnrA gltA Nos -43..-60 TGTGAGAAAAATTGCTA 7.044340
TnrA gabP Bsu -86..-103 TGTAAGAAAATATACCA 13.226720
TnrA gabP Lla -57..-40 TGGTATAATAATTAACA 6.688800
TnrA gabP Eco -128..-145 TGTAATAAAAAAGCAGA 5.901770
TnrA gabP EcZ -128..-145 TGTAATAAAAAAGCAGA 5.901770
TnrA gabP Ecs -128..-145 TGTAATAAAAAAGCAGA 5.901770
TnrA gabP Ype -82..-65 TGTTAAAAAAACCGCCG 6.574140
TnrA gabP Hpy -40..-23 TAAAAGAAAATATGAAA 6.140550
TnrA gabP Fnu -44..-27 TTTTAGAAAGTCTTCCA 6.618820
TnrA nrgA Bsu -102..-85 TGTCAGGAAATCTTACA 13.529390
TnrA nrgA Bha -138..-121 TGTCAGATATAGGCACA 5.962170
TnrA nrgA Lla -121..-138 TGTCACAAAACATAACA 11.756230
TnrA nrgA Lin -127..-110 TGTTAGATAACCTAACC 8.798790
TnrA nrgA Cgl -141..-158 TGGCAGAACCCCTAAAA 6.014550
TnrA nrgA Nme -236..-253 TGTAGGAAAATATACAG 6.230150
TnrA nrgA Nos -241..-258 TTTCAGGAATTCTGAAA 5.844980
TnrA yodF Bsu -244..-261 TGTAAGAAAAGATCACA 12.637450
TnrA yodF Pmu -143..-126 TTAAAGGAAAAATAACG 5.800150
TnrA glnR Bsu -82..-65 TGTTAAGAATCCTTACA 6.879980
TnrA glnR Bha -110..-93 TGTAAGAAAATCTAACA 15.119810
TnrA glnR Cac -97..-114 TGGCATAAAATAAAAAA 6.962950
TnrA glnR Lla -73..-56 TGTGAGAAAATCTCACA 13.699460
TnrA glnR Spn -59..-76 TGTTATAAAATGTAACA 11.961640
TnrA glnR Lin -148..-165 TGGAAAAACTTATGACA 6.569710
TnrA glnR EcZ -61..-44 TGTAGCAAAAATTACCG 5.711800
TnrA glnR Sty -225..-242 TGTCACGAAAAGTGAGG 7.173550
TnrA glnR Vch -165..-182 TGAAAGAAGACATGACC 6.804160
TnrA glnR Syn -103..-86 TGGGAGAAAATCGTCCT 7.060670
TnrA glnR Fnu -87..-70 TGTCAGAAAATTAGAAA 7.617180
TnrA pel Bsu -43..-26 TGGAATAAAATCTCACA 12.300340
TnrA alsT Bsu -240..-223 GGGAAGAAATGATTACA 7.755220
TnrA alsT Bha -111..-128 CGTTAGGAAGTCTAACA 9.417770
TnrA alsT Sty -244..-227 TGTTAGGGGATGTAACC 5.682140
TnrA alsT Nme -92..-109 AATCAGAAAAATTTACA 5.866720
TnrA alsT NmA -92..-109 AATCAGAAAAATTTACA 5.866720
TnrA alsT Fnu -108..-125 TCTAAAAAAATATAAAA 6.317770
TnrA oppA Bsu -231..-214 TGGAAGAAAAACTAACG 12.364940
TnrA oppA Lla -126..-109 TTTCAGAAAACATAACC 7.894410
TnrA oppA Lin -153..-170 CGTAATCAAAATTTACA 5.958950
TnrA oppA Ype -34..-51 TGTACCGTAATCTGACG 5.805410
TnrA oppA Sty -98..-115 GGTAAGCAAATTTAGCA 5.771580
TnrA oppA Mlo -75..-92 TGTCATCAAGAATTACA 6.098270
TnrA oppA Bbu -27..-44 TGTTTTAAAATTTAACT 5.825520
TnrA oppA Tma -97..-80 TGGAACTCAATATCACA 6.106090
TnrA ywrD Bsu -66..-83 CGGCAGAAAAACTGACG 11.439690
TnrA ywrD Nme -180..-197 TGTAGGATAATATCACT 6.273740
TnrA ywrD Nos -135..-152 TGGGATAAAACCTAGCT 5.950250
TnrA tnrA Bsu -82..-65 TGTTAAGAATCCTTACA 6.879980
TnrA tnrA Bha -110..-93 TGTAAGAAAATCTAACA 15.119810
TnrA tnrA Cac -97..-114 TGGCATAAAATAAAAAA 6.962950
TnrA tnrA Lla -73..-56 TGTGAGAAAATCTCACA 13.699460
TnrA tnrA Spn -59..-76 TGTTATAAAATGTAACA 11.961640
TnrA tnrA Lin -148..-165 TGGAAAAACTTATGACA 6.569710
TnrA tnrA EcZ -61..-44 TGTAGCAAAAATTACCG 5.711800
TnrA tnrA Sty -225..-242 TGTCACGAAAAGTGAGG 7.173550
TnrA tnrA Vch -165..-182 TGAAAGAAGACATGACC 6.804160
TnrA tnrA Syn -103..-86 TGGGAGAAAATCGTCCT 7.060670
TnrA tnrA Fnu -87..-70 TGTCAGAAAATTAGAAA 7.617180
TnrA nasD Bsu -135..-152 ATTCAGAAAATGTAAAA 5.936370
TnrA nasD Ype -128..-111 TATCAAAAAAGCTTAAA 6.070440
TnrA nasD Aae -24..-41 TTGCAAAAAACGTGCCA 6.244730
TnrA ywlF Bsu -154..-137 TGTCAGAAAATCTGCAA 11.670480
TnrA ywlF Lin -245..-262 TGCAACAAAATGTCGCA 7.019330
TnrA ywlF Ype -162..-145 TATAACAAATGATCACA 5.743670
TnrA glnQ Bsu -11..-28 TATCAGAAAATTTGACC 7.961970
TnrA glnQ Cac -157..-174 AGGTATAAAAAATACCA 7.104610
TnrA glnQ Spy -80..-97 TGTCATAAAACATAACA 11.551320
TnrA glnQ Spn -32..-15 TGTTATAAAATATAACA 11.959390
TnrA glnQ Ecs -276..-293 GGTGCGAAAATGAAACA 5.952020
TnrA glnQ Sty -36..-53 GGGTAGAAAGGCTTACG 6.142630
TnrA glnQ Nos -64..-47 AGTAAGGAAAAATGACT 7.202410
TnrA nasA Bsu -98..-81 TGTCACAAAAACTTACA 12.660770
TnrA nasA Bha -63..-80 TGGGAGGATATCTTACA 8.957140
TnrA nasA Sau -17..0 TGAAAGAAGGGATAACA 6.955560
TnrA nasA Mtu -18..-1 CGACAGGAGACCTAACC 6.198220
TnrA nasA MtC -18..-1 CGACAGGAGACCTAACC 6.198220
TnrA nasA Eco -167..-184 TGTTACTAAATGTAACT 7.364530
TnrA nasA EcZ -167..-184 TGTTACTAAATGTAACT 7.364530
TnrA nasA Ecs -167..-184 TGTTACTAAATGTAACT 7.364530
TnrA nasA Aae -234..-251 TATCAAATAATTTGACA 5.827710