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Copyright: Human Genome Center, Inst. Med. Sci., Univ. Tokyo; 1999-2008
Contact: Kenta Nakai |
| Regulated Operon: | ahpCF |
| Genes | Synonyms | Direction | Genome position | Function | COG ID | Conserved groups |
|---|---|---|---|---|---|---|
| ahpC | perR | + | 4118950..4119513 | COG0450O | ahpC-BAC ahpC-STA x0088-BAC | |
| ahpF | ndh | + | 4119527..4121056 | COG3634O | ahpF-BAC ahpF-STA |
| Operon evidence: | Northern blotting (2.4 kb transcript) |
|---|---|
| Reference: | Antelmann H, et al. (1996), BSORF |
| Comments: |
| Binding factor |
Regulation | Location | Absolute position | Binding seq.(cis-element) | Experimental evidence |
|---|---|---|---|---|---|
| PerR | Negative | -36:+26 | 4118850..4118911 | CTTGACAAAAAATATATATTAATTAATAATTCATATATAATTAGAATTATTATTGAAAGCGA |
Herbig AF, et al. (2001): FT |
| SigA | Promoter | -41:+6 | 4118845..4118891 | TATGGCTTGACAAAAAATATATATTAATTAATAATTCATATATAATT |
Antelmann H, et al. (1996): PE HM |
| Terminator sequence | Absolute position | Position from stop codon | Free energy [kcal/mol] |
Downstream of |
|---|---|---|---|---|
| AGAAATCCGCTATATTGCCAGATTGGCAGGATAGCGGATTTTTCTTTTTCTAC >>>>>>>>>>>>>>> <<<<<<<<<<<<<<< |
ahpF |
|