Regulated Operon: codV-clpQY-codY

Genes
Genes Synonyms Direction Genome position Function COG ID Conserved groups
codV
+ 1687187..1688101
COG4974L codV-BAC  
clpQ codW + 1688114..1688659
COG5405O hslV-BAC  
clpY codX + 1688676..1690079
COG1220O clpY-BAC clpY-STA  
codY
+ 1690119..1690898
COG4465K codY-BAC codY-STA x0200-STR  

Operon evidence: plasmid integrations and in-frame deletion mutations
Reference: Slack FJ, et al. (1995)
Comments:


Promoters

Binding
factor
Regulation Location Absolute position Binding seq.(cis-element) Experimental evidence
SigA Promoter -43:+6 1687120..1687168 GTATTGATTGCAACCTGAGCGCGATTTGTGATACCATTTAAAAGCCCTT Slack FJ, et al. (1995): PE

Terminator

Terminator sequence Absolute position Position from stop codon Free energy
[kcal/mol]
Downstream of
AAAAAGAACCCTTTTTGAGGGTTCTTTTTTTATTTCAAA
     >>>>>>>>   <<<<<<<<
1690908..1690926
10..28
-12.2
codY

Overview



Upper Region






Copyright: Human Genome Center, Inst. Med. Sci., Univ. Tokyo; 1999-2008
Contact: Kenta Nakai