Regulated Operon: comGABCDEFG-yqzE

Genes
Genes Synonyms Direction Genome position Function COG ID Conserved groups
comGA
- 2559007..2560077
COG2804NU comYA-STR  
comGB
- 2557983..2558954
COG1459NU  
comGC
- 2557673..2557969
COG4537U comGC-STA  
comGD
- 2557252..2557683

 
comGE
- 2556921..2557268

 
comGF
- 2556512..2556895
COG4940U  
comGG
- 2556137..2556511

 
yqzE
- 2555887..2556066

 

Operon evidence: S1 nuclease mapping; Northern blotting (5.0 kb transcript)
Reference: Albano M, et al. (1989), Albano M & Dubnau DA (1989)
Comments:

Promoters

Binding
factor		 Regulation Location Absolute position Binding seq.(cis-element) Experimental evidence
ComK Positive -104:-69 2560165..2560200 TCTTTTTTCTTGCCAGAAAGAATTGGTTTTTCAGCA Guillen N, et al. (1989): DB RG
Roggiani M, et al. (1990): RG DB
Kong L, et al. (1993): RG DB
Kong L & Dubnau D (1994): RG DB
Van Sinderen D, et al. (1994): DB RG
Van Sinderen D, et al. (1995): GS RG OV
Msadek T, et al. (1995): Two-Component Signal Transduction, pp. 447-471: DB RG
Hahn J, et al. (1996): DB OV RG
Hamoen LW, et al. (1998): FT
Berka RM, et al. (2002): AR HM
ComK Positive -69:-32 2560128..2560165 ATATAACATCTCACAAAATCACGTTTTCCCTGTTTGAT Guillen N, et al. (1989): DB RG
Roggiani M, et al. (1990): RG DB
Kong L, et al. (1993): RG DB
Kong L & Dubnau D (1994): RG DB
Van Sinderen D, et al. (1994): DB RG
Van Sinderen D, et al. (1995): GS RG OV
Msadek T, et al. (1995): Two-Component Signal Transduction, pp. 447-471: DB RG
Hahn J, et al. (1996): DB OV RG
Hamoen LW, et al. (1998): FT
Berka RM, et al. (2002): AR HM
ComZ Negative ND ND ND Ogura M & Tanaka T (2000): DB RG
SigA Promoter -49:+17 2560080..2560145 ACGTTTTCCCTGTTTGATTACCTTTTCTTCTTTTTCTACAATATGCGTTGAAAGGAGAGGGAATCA Albano M, et al. (1989): PE

Terminator

Terminator sequence Absolute position Position from stop codon Free energy
[kcal/mol]		 Downstream of
GAACAGTACCTGTGCGAGCGGGTACCTTTTTTTTGCTTCTT
     >>>>>>>>    <<<<<<<<
2555659..2555678
209..228
-16.1
 yqzE

Overview



Upper Region
Copyright: Human Genome Center, Inst. Med. Sci., Univ. Tokyo; 1999-2008
Contact: Kenta Nakai