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Copyright: Human Genome Center, Inst. Med. Sci., Univ. Tokyo; 1999-2008
Contact: Kenta Nakai |
| Regulated Operon: | ctaA |
| Genes | Synonyms | Direction | Genome position | Function | COG ID | Conserved groups |
|---|---|---|---|---|---|---|
| ctaA | - | 1558034..1558954 | COG1612O | ctaA-BAC ctaA-STA |
| Operon evidence: | RNase protection hybridization |
|---|---|
| Reference: | Mueller JP & Taber HW (1989) |
| Comments: | The RNase protection hybridization shows that transcription ends in the TTTGGTCTTTTTT stretch. |
| Binding factor |
Regulation | Location | Absolute position | Binding seq.(cis-element) | Experimental evidence |
|---|---|---|---|---|---|
| ResD | Positive | -108:-55 | 1559036..1559088 | TACATTTTCCAGAAGCCGTCATTCTATTATATTTTTGTGAACAAAAGGCTCTG |
Paul S, et al. (2001): GS PE, in-vitro transcription assay Zhang X & Hulett FM (2000): GS FT DP RG Sun G, et al. (1996): DB |
| ResD | Positive | -2:+43 | 1558940..1558984 | GCAGCAGTATGTTAAGAAGGTGAATATTGTATGAATAAAGCATTA |
Zhang X & Hulett FM (2000): GS FT DP RG Sun G, et al. (1996): DB |
| SigA | Promoter | -39:+9 | 1558988..1559035 | GGAATTGCCACAAAACACATATTCGCTTACACTTGGAACGTATATAAA |
Paul S, et al. (2001): PE, in-vitro transcription assay |
| SigE | Promoter | -47:+6 | 1558977..1559029 | GCCACAAAACACATATTCGCTTACACTTGGAACGTATATAAAATTGCAGCAGT |
Paul S, et al. (2001): PE DB Mueller JP & Taber HW (1989): S1 |
| Terminator sequence | Absolute position | Position from stop codon | Free energy [kcal/mol] |
Downstream of |
|---|---|---|---|---|
| CATAAGGACTCAAGACCAAAGCCTTAGGCGGCTTTGGTCTTTTTTATGTCTTGT >>>>>>>>>> <<<<<<<<<< |
ctaA |
|