Regulated Operon: dacB-spmAB

Genes
Genes Synonyms Direction Genome position Function COG ID Conserved groups
dacB
- 2423383..2424531
COG1686M  
spmA ypuJ - 2422805..2423395
COG2715R  
spmB ypuK - 2422264..2422800
COG0700S  

Operon evidence: lacZ transcriptional fusions
Reference: Popham DL, et al. (1995), Sorokin A, et al. (1993)
Comments:


Promoters

Binding
factor
Regulation Location Absolute position Binding seq.(cis-element) Experimental evidence
SigE Promoter -36:+7 2424552..2424594 TTATTCATAACTGATGGACATGCGCATAAACTTGTACAAACCA Simpson EB, et al. (1994): PE
Buchanan CE & Ling ML (1992): DB, immunoassay

Terminator

Terminator sequence Absolute position Position from stop codon Free energy
[kcal/mol]
Downstream of
GTTACGTTATTATTTGGGAGCGCCTGAAAACGGCGTTTTTTTTAGATTTG
     >>>>>>>>>>>>>    <<<<<<<<<<<<
2422257..2422285
-21..7
-8.3
spmB

Overview



Upper Region






Copyright: Human Genome Center, Inst. Med. Sci., Univ. Tokyo; 1999-2008
Contact: Kenta Nakai