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Copyright: Human Genome Center, Inst. Med. Sci., Univ. Tokyo; 1999-2008
Contact: Kenta Nakai |
| Regulated Operon: | dctSRP |
| Genes | Synonyms | Direction | Genome position | Function | COG ID | Conserved groups |
|---|---|---|---|---|---|---|
| dctS | ydbF | + | 497768..499375 | COG3290T | ||
| dctR | ydbG | + | 499365..500045 | COG4565KT | ||
| dctP | ydbH | + | 500166..501431 | COG1301C |
| Operon evidence: | Northern blotting (3.8 kb transcript) |
|---|---|
| Reference: | Asai K, et al. (2000), Genbank AB001488 |
| Comments: | An internal promoter in front of dctP leads to a 1.3 kb transcript |
| Binding factor |
Regulation | Location | Absolute position | Binding seq.(cis-element) | Experimental evidence |
|---|---|---|---|---|---|
| CcpA | Negative | -43:+7 | 500081..500130 | TCATAAACTTCCCCAGACTGTATGAAAACGCTATCATTCTAGTAAGAAAG |
Miwa Y, et al. (2000): RG Asai K, et al. (2000): DP RG DB |
| SigA | Promoter | -43:+7 | 500081..500130 | TCATAAACTTCCCCAGACTGTATGAAAACGCTATCATTCTAGTAAGAAAG |
Asai K, et al. (2000): PE |
| DctR | Positive | ND | ND | ND |
Asai K, et al. (2000): DB OV RG |
| Terminator sequence | Absolute position | Position from stop codon | Free energy [kcal/mol] |
Downstream of |
|---|---|---|---|---|
| AAGAACGGCCCATCCATGGGCCGTTTTTTTAATTGTTT >>>>>>> <<<<<<< |
dctP |
|