Regulated Operon: dppABCDE

Genes
Genes Synonyms Direction Genome position Function COG ID Conserved groups
dppA dciAA + 1360401..1361225
COG2362E  
dppB dciAB + 1361242..1362168
COG0601EP  
dppC dciAC + 1362174..1363136
COG1173EP  
dppD dciAD + 1363141..1364148
COG0444EP  
dppE dciAE + 1364151..1365800
COG4166E  

Operon evidence: Northern blotting (5.9 kb transcript)
Reference: Mathiopoulos C, et al. (1991), Yoshida K, et al. (2003)
Comments:


Promoters

Binding
factor
Regulation Location Absolute position Binding seq.(cis-element) Experimental evidence
AbrB Negative -16:+18 1360349..1360382 TTTAATATAATTTGTTAGAATATTCATAATTTAG Slack FJ, et al. (1991): FT DB
CodY Negative -7:+31 1360358..1360395 ATTTGTTAGAATATTCATAATTTAGTAAAAAAGGAGGA Serror P, et al. (1996): GS FT
SigA Promoter -46:+19 1360319..1360383 TTCCCAGTTATATTGCATTTTTCCTCTTTTTTTAATATAATTTGTTAGAATATTCATAATTTAGT Slack FJ, et al. (1991): PE

Terminator

Terminator sequence Absolute position Position from stop codon Free energy
[kcal/mol]
Downstream of
GGAAATACTGCTTCTTTATGCGAAGGAGCGGTATTTTTTCTCTTTCTT
     >>>>>>>>>>>>    <<<<<<<<<<<<
1365819..1365846
19..46
-17.3
dppE

Overview



Upper Region






Copyright: Human Genome Center, Inst. Med. Sci., Univ. Tokyo; 1999-2008
Contact: Kenta Nakai