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Copyright: Human Genome Center, Inst. Med. Sci., Univ. Tokyo; 1999-2008
Contact: Kenta Nakai |
| Regulated Operon: | dppABCDE |
| Genes | Synonyms | Direction | Genome position | Function | COG ID | Conserved groups |
|---|---|---|---|---|---|---|
| dppA | dciAA | + | 1360401..1361225 | COG2362E | ||
| dppB | dciAB | + | 1361242..1362168 | COG0601EP | ||
| dppC | dciAC | + | 1362174..1363136 | COG1173EP | ||
| dppD | dciAD | + | 1363141..1364148 | COG0444EP | ||
| dppE | dciAE | + | 1364151..1365800 | COG4166E |
| Operon evidence: | Northern blotting (5.9 kb transcript) |
|---|---|
| Reference: | Mathiopoulos C, et al. (1991), Yoshida K, et al. (2003) |
| Comments: |
| Binding factor |
Regulation | Location | Absolute position | Binding seq.(cis-element) | Experimental evidence |
|---|---|---|---|---|---|
| AbrB | Negative | -16:+18 | 1360349..1360382 | TTTAATATAATTTGTTAGAATATTCATAATTTAG |
Slack FJ, et al. (1991): FT DB |
| CodY | Negative | -7:+31 | 1360358..1360395 | ATTTGTTAGAATATTCATAATTTAGTAAAAAAGGAGGA |
Serror P, et al. (1996): GS FT |
| SigA | Promoter | -46:+19 | 1360319..1360383 | TTCCCAGTTATATTGCATTTTTCCTCTTTTTTTAATATAATTTGTTAGAATATTCATAATTTAGT |
Slack FJ, et al. (1991): PE |
| Terminator sequence | Absolute position | Position from stop codon | Free energy [kcal/mol] |
Downstream of |
|---|---|---|---|---|
| GGAAATACTGCTTCTTTATGCGAAGGAGCGGTATTTTTTCTCTTTCTT >>>>>>>>>>>> <<<<<<<<<<<< |
dppE |
|