Regulated Operon: fbp

Genes
Genes Synonyms Direction Genome position Function COG ID Conserved groups
fbp yydE + 4128029..4130044
COG3855G x0209-STR  

Operon evidence: Northern blotting (2.4 kb transcript); upstream and downstream genes are on the opposite strand
Reference: Fujita Y, et al. (1998), BSORF
Comments: Another putative terminator was found close to the stop codon; however, its location does not agree well with the Northern blotting result.


Promoters

Binding
factor
Regulation Location Absolute position Binding seq.(cis-element) Experimental evidence
SigA Promoter -46:+5 4127978..4128028 GTTTTAATTGTCTCTAAAAGCAGTTATGCGGTACTATCATATAAAGGTCCA Fujita Y, et al. (1998): PE

Terminator

Terminator sequence Absolute position Position from stop codon Free energy
[kcal/mol]
Downstream of
AAAAAAAGTCCATTCTATATAACTCTCGCTAGGGTGGACCTTTTTCAACATTCAA
       >>>>>>>>>>            <<<<<<<<<<
4130345..4130376
301..332
-13.8
fbp

Overview



Upper Region






Copyright: Human Genome Center, Inst. Med. Sci., Univ. Tokyo; 1999-2008
Contact: Kenta Nakai