Regulated Operon: gabR

Genes
Genes Synonyms Direction Genome position Function COG ID Conserved groups
gabR ycnF - 440025..441464
COG1167KE  

Operon evidence: Genome analysis
Reference:
Comments:


Promoters

Binding
factor
Regulation Location Absolute position Binding seq.(cis-element) Experimental evidence
GabR Negative ND ND ND Belitsky BR & Sonenshein AL (2002): PE SDM
SigA Promoter -45:+6 441505..441555 TCGGTATTTTCTTATCATTCTGACTTCTCTTTGGTATGATGAAAAGTACCA Belitsky BR & Sonenshein AL (2002): PE

Terminator

Terminator sequence Absolute position Position from stop codon Free energy
[kcal/mol]
Downstream of
ATTTGGCAACCTGCACATCTGCACAGGTGCTGCACGTTTTTTCTTTTGCTT
     >>>>>>>>>>    <<<<<<<<<<<<<<
439830..439857
168..195
-11.9
gabR

Overview



Upper Region






Copyright: Human Genome Center, Inst. Med. Sci., Univ. Tokyo; 1999-2008
Contact: Kenta Nakai