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Copyright: Human Genome Center, Inst. Med. Sci., Univ. Tokyo; 1999-2008
Contact: Kenta Nakai |
| Regulated Operon: | gapB-speD |
| Genes | Synonyms | Direction | Genome position | Function | COG ID | Conserved groups |
|---|---|---|---|---|---|---|
| gapB | - | 2967032..2968054 | COG0057G | gapA-BAC-2 stu1788-LAB | ||
| speD | ytcF | - | 2966413..2966793 | COG1586E | speD-BAC |
| Operon evidence: | Northern blotting (1.8 kb transcript) |
|---|---|
| Reference: | Sekowska A, et al. (2000) |
| Comments: | The internal promoter in front of speD leads to a 0.6 kb monocistronic speD transcript. |
| Binding factor |
Regulation | Location | Absolute position | Binding seq.(cis-element) | Experimental evidence |
|---|---|---|---|---|---|
| YqzB | Negative | -40:+42 | 2968059..2968140 | ATGTACTGGCGAATTTGTTTTAATGTGTTATACTAATTTTAGATAGTAACAAATTAGGATGGCATAATTGATAAGGGGTGTC |
Servant P, et al. (2005): RG DB GS FT |
| SigA | Promoter | -48:+10 | 2968091..2968148 | TTATCAATATGTACTGGCGAATTTGTTTTAATGTGTTATACTAATTTTAGATAGTAAC |
Servant P, et al. (2005): PE |
| SigA | Promoter | -40:+6 | 2966927..2966972 | GCACCTTGCAAATTAGACTTAAACACAGTATACTATTTTTCGTGAA |
Sekowska A, et al. (2000): PE NB |
| Terminator sequence | Absolute position | Position from stop codon | Free energy [kcal/mol] |
Downstream of |
|---|---|---|---|---|
| CAAAGGGAGCTGAAGCTAGAAAGCCATTATGCGCTTTTTAGCTTATGCTCCTTTTATTTTTATAAA >>>>>>>>>>>>>>>>>>>>> <<<<<<<<<<<<<<<<<<<<<< |
speD |
|