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Copyright: Human Genome Center, Inst. Med. Sci., Univ. Tokyo; 1999-2008
Contact: Kenta Nakai |
| Regulated Operon: | htrA |
| Genes | Synonyms | Direction | Genome position | Function | COG ID | Conserved groups |
|---|---|---|---|---|---|---|
| htrA | ykdA | - | 1357936..1359285 | COG0265O | htrA-STR |
| Operon evidence: | upstream and downstream genes are on the opposite strand |
|---|---|
| Reference: | |
| Comments: |
| Binding factor |
Regulation | Location | Absolute position | Binding seq.(cis-element) | Experimental evidence |
|---|---|---|---|---|---|
| CssR | Positive | ND | ND | ND |
Hyyrylainen HL, et al. (2001): RG |
| HtrA | Negative | -107:+6 | 1359340..1359452 | GACTCAGTCCTTTCATATACAATATGAAGTGTACCGTTTTCCGCACTTTTTCACAATTTCCCATAATCTTTTCATTTTTATCCCACAGTTTTTGTTTATGATAAACTCAAGTC |
Noone D, et al. (2000): PE NB RG |
| SigA | Promoter | -44:+7 | 1359339..1359389 | TAATCTTTTCATTTTTATCCCACAGTTTTTGTTTATGATAAACTCAAGTCA |
Noone D, et al. (2000): PE RG |
| Terminator sequence | Absolute position | Position from stop codon | Free energy [kcal/mol] |
Downstream of |
|---|---|---|---|---|
| ATAATGCCTCAGGCCGTAAAAGCGGTCTGAGGCTTTTTATTAGATAAA >>>>>>>>>>>> <<<<<<<<<<<< |
htrA |
|