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Copyright: Human Genome Center, Inst. Med. Sci., Univ. Tokyo; 1999-2008
Contact: Kenta Nakai |
| Regulated Operon: | kdgRKAT |
| Genes | Synonyms | Direction | Genome position | Function | COG ID | Conserved groups |
|---|---|---|---|---|---|---|
| kdgR | - | 2324613..2325632 | COG1609K | |||
| kdgK | - | 2323601..2324575 | COG0524G | |||
| kdgA | - | 2323009..2323599 | COG0800G | |||
| kdgT | - | 2321972..2322964 |
| Operon evidence: | Northern blotting (3.7 kb transcript) |
|---|---|
| Reference: | Pujic P, et al. (1998) |
| Comments: |
| Binding factor |
Regulation | Location | Absolute position | Binding seq.(cis-element) | Experimental evidence |
|---|---|---|---|---|---|
| KdgR | Negative | ND | ND | ND |
Pujic P, et al. (1998): NB RG DB |
| SigA | Promoter | -43:+5 | 2325678..2325725 | AAAAAACTCTTCCCAAATTTTAAAATTATGGTATTCTTTTGTTGTAAC |
Pujic P, et al. (1998): PE |
| CcpA | Negative | ND | 2323226..2323248 | ATTATGGAAGCGCTGACATTCGG |
Miwa Y, et al. (2000): RG |
| Terminator sequence | Absolute position | Position from stop codon | Free energy [kcal/mol] |
Downstream of |
|---|---|---|---|---|
| AAAAAGGCTGCCACAAAACATACCGGCAGCCTTTTATACAAACAAT >>>>>>> <<<<<<< |
kdgT |
|