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Copyright: Human Genome Center, Inst. Med. Sci., Univ. Tokyo; 1999-2008
Contact: Kenta Nakai |
| Regulated Operon: | liaGFSR |
| Genes | Synonyms | Direction | Genome position | Function | COG ID | Conserved groups |
|---|---|---|---|---|---|---|
| liaG | - | 3396873..3397745 | COG3595S | |||
| liaF | - | 3396114..3396839 | COG4758S | |||
| liaS | - | 3395035..3396117 | COG4585T | |||
| liaR | - | 3394422..3395057 | COG2197TK |
| Operon evidence: | ND |
|---|---|
| Reference: | Jordan S, et al. (2006) |
| Comments: | TSS of liaG is confirmed |
| Binding factor |
Regulation | Location | Absolute position | Binding seq.(cis-element) | Experimental evidence |
|---|---|---|---|---|---|
| SigA | Promoter | -50:+10 | 3397756..3397815 | CTTCCCTTCCGCACGTATCAATTCGCAAGCTTTTCCTTTATAATAGAATGAATGAGAAGG |
Jordan S, et al. (2006): Data not shown |
| Terminator sequence | Absolute position | Position from stop codon | Free energy [kcal/mol] |
Downstream of |
|---|---|---|---|---|
| CTCGTGAATTAGGCGGCTGCTATTTGTTTGCGCCTTT >>> <<< |
liaR |
|