 |
Copyright: Human Genome Center, Inst. Med. Sci., Univ. Tokyo; 1999-2008
Contact: Kenta Nakai |
| Regulated Operon: | licBCAH |
| Genes | Synonyms | Direction | Genome position | Function | COG ID | Conserved groups |
|---|---|---|---|---|---|---|
| licB | celA | - | 3961566..3961874 | COG1440G | x0802-BAC | |
| licC | celB | - | 3960192..3961550 | COG1455G | licC-BAC x1227-BAC x1295-BAC | |
| licA | celC | - | 3959841..3960173 | COG1447G | celC-BAC | |
| licH | celF | - | 3958516..3959844 | COG1486G |
| Operon evidence: | Northern blotting (3.4 kb transcript) |
|---|---|
| Reference: | Tobisch S, et al. (1997), Genbank Z49992 |
| Comments: |
| Binding factor |
Regulation | Location | Absolute position | Binding seq.(cis-element) | Experimental evidence |
|---|---|---|---|---|---|
| CcpA | Negative | -40:+6 | 3961916..3961961 | CTGAGTGTTTATGAAAGCGATTTCATAATATGATGATAGCAACAGC |
Tobisch S, et al. (1999): RG Tobisch S, et al. (1997): HM |
| LicR | Positive | ND | ND | ND |
Tobisch S, et al. (1999): RG Tobisch S, et al. (1997): RG DB |
| SigA | Promoter | -40:+6 | 3961916..3961961 | CTGAGTGTTTATGAAAGCGATTTCATAATATGATGATAGCAACAGC |
Tobisch S, et al. (1997): PE NB |
| Terminator sequence | Absolute position | Position from stop codon | Free energy [kcal/mol] |
Downstream of |
|---|---|---|---|---|
| AAAAAGCCGGCCTGTAATGGGCCGGCTTTTTTCTTACTTGC >>>>>>>> <<<<<<<< |
licH |
|