Regulated Operon: mhqED

Genes
Genes Synonyms Direction Genome position Function COG ID Conserved groups
yodE mhqE - 2129082..2129993
COG0346E  
yodD mhqD - 2128464..2129066
COG0400R x0117-BAC  

Operon evidence: Northern blotting (1.6 kb transcript)
Reference: Towe S, et al. (2007), Nguyen VD, et al. (2007)
Comments:


Promoters

Binding
factor
Regulation Location Absolute position Binding seq.(cis-element) Experimental evidence
SigA Promoter -50:+10 2130016..2130075 TCAAAACACATGGTTTGCATCCTTTTCAATAAAGGTTTAAAATAATAAATATCTTGAAAT Towe S, et al. (2007): PE
YkvE Negative -10:+30 2129996..2130035 AATAATAAATATCTTGAAATCGAGATAAATAGGAGTGAGA Towe S, et al. (2007): AR 2D-gel GS FT

Terminator

Terminator sequence Absolute position Position from stop codon Free energy
[kcal/mol]
Downstream of
TGTATAAAAAAACCTTAGTCCGGATTTCGGACTAAGGTTTTTCATATCCTTA
            >>>>>>>>>>>   <<<<<<<<<<<
2128434..2128458
6..30
-18.4
yodD

Overview



Upper Region






Copyright: Human Genome Center, Inst. Med. Sci., Univ. Tokyo; 1999-2008
Contact: Kenta Nakai