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Copyright: Human Genome Center, Inst. Med. Sci., Univ. Tokyo; 1999-2008
Contact: Kenta Nakai |
| Regulated Operon: | mtnWXBD |
| Genes | Synonyms | Direction | Genome position | Function | COG ID | Conserved groups |
|---|---|---|---|---|---|---|
| ykrW | mtnW | + | 1427034..1428278 | COG1850G | ykrW-BAC | |
| ykrX | mtnX | + | 1428275..1428982 | COG4359E | ||
| ykrY | mtnY, mtnB | + | 1428940..1429569 | COG0235G | ||
| ykrZ | mtnZ, mtnD | + | 1428892..1429428 |
| Operon evidence: | Northern blot (3.2 kb transcript) |
|---|---|
| Reference: | Sekowska A & Danchin A (2002) |
| Comments: | An 2.5 kb transcript was also found, which may be the result of RNA processing at the end of the S-box regulatory sequence of the 5' extremity of the transcript |
| Binding factor |
Regulation | Location | Absolute position | Binding seq.(cis-element) | Experimental evidence |
|---|---|---|---|---|---|
| SigA | Promoter | -50:+26 | 1426807..1426882 | TACCCAAAAAAGCATTGACAAGACCTTATAACGATGGGATAATTCAAAATAATTTATAAAATCTATATTTTCTTAT |
Sekowska A & Danchin A (2002): PE |
| SigA | Promoter | -53:+11 | 1426823..1426886 | GACAAGACCTTATAACGATGGGATAATTCAAAATAATTTATAAAATCTATATTTTCTTATCAAG |
Sekowska A & Danchin A (2002): PE |
| Terminator sequence | Absolute position | Position from stop codon | Free energy [kcal/mol] |
Downstream of |
|---|---|---|---|---|
| AATAAGCGTGAGATAGCCCCGTTCATCGAACGGGGCTTTTTATATTTATTG >>>>>>>>> <<<<<<<<< |
ykrY |
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