Regulated Operon: nrdIEF-ymaB

Genes
Genes Synonyms Direction Genome position Function COG ID Conserved groups
ymaA nrdI + 1868617..1869009
COG1780F ymaA-BAC nrdI-STA ymaA-BAC  
nrdE
+ 1868969..1871071
COG0209F nrdE-MYC nrdE-STR  
nrdF
+ 1871089..1872078
COG0208F nrdF-MYC nrdF-STA nrdF-STR  
ymaB
+ 1872128..1872748
COG4112R  

Operon evidence: Northern blotting (4.1 kb transcript)
Reference: Scotti C, et al. (1996), Hartig E, et al. (2006), Genbank Z68500
Comments: The readthrough terminator downstream of nrdF leads to a 3.4 kb nrdIEF transcript.

Promoters

Binding
factor		 Regulation Location Absolute position Binding seq.(cis-element) Experimental evidence
ResD Positive -69:-44 1868500..1868525 AAAATATGAATTTTTCATAAAAACGA Hartig E, et al. (2006): RG DB SDM
SigA Promoter -46:+9 1868523..1868577 CGAATCTATATATTGTGTTTTTGCTAGAGGGTAGTATACTATATATAGTGTTAGT Hartig E, et al. (2006): PE

Terminator

Terminator sequence Absolute position Position from stop codon Free energy
[kcal/mol]		 Downstream of
TGAAGATGAAAAAGAGCAGATATAATATCTGCTCTTTTCGGCTTGAAGG
             >>>>>>>>>   <<<<<<<<<
1872067..1872087
-11..9
-14.1
 nrdF
TTCTTGAATAAAAAAACCCGGTTTCTCGCGATGAGGAGCCGGGTTTTTTTATGAGACG
                >>>>>>>>>>>     <<<<<<<<<<<
1872754..1872780
6..32
-21.0
 ymaB

Overview



Upper Region
Copyright: Human Genome Center, Inst. Med. Sci., Univ. Tokyo; 1999-2008
Contact: Kenta Nakai