Regulated Operon: pckA

Genes
Genes Synonyms Direction Genome position Function COG ID Conserved groups
pckA ppc + 3129530..3131113
COG1866C pckA-BAC pckA-STA ppc-STR  

Operon evidence: Genome analysis; upstream and downstream genes are on the opposite strand
Reference: Lapidus A, et al. (1997), Genbank AF008220
Comments:


Promoters

Binding
factor
Regulation Location Absolute position Binding seq.(cis-element) Experimental evidence
YqzB Negative -51:+12 3129440..3129502 AAAACAATAAATAGTATAGACTATTTGAAAATATATGTTATACTAATTCACAATTAGCAAAAC Servant P, et al. (2005): RG DB GS FT
SigA Promoter -59:+15 3129432..3129505 ACACACAAAAAACAATAAATAGTATAGACTATTTGAAAATATATGTTATACTAATTCACAATTAGCAAAACACA Servant P, et al. (2005): PE

Terminator

Terminator sequence Absolute position Position from stop codon Free energy
[kcal/mol]
Downstream of
CAAAAGCCAAGAGCAATTATGCTCTTGGCTTGTTTTAATTGACG
     >>>>>>>>>>    <<<<<<<<<<
3131123..3131146
10..33
-19.4
pckA

Overview



Upper Region






Copyright: Human Genome Center, Inst. Med. Sci., Univ. Tokyo; 1999-2008
Contact: Kenta Nakai