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Copyright: Human Genome Center, Inst. Med. Sci., Univ. Tokyo; 1999-2008
Contact: Kenta Nakai |
| Regulated Operon: | pcrBA-ligA-yerH |
| Genes | Synonyms | Direction | Genome position | Function | COG ID | Conserved groups |
|---|---|---|---|---|---|---|
| pcrB | yerE | + | 718622..719308 | COG1646R | x1013-BAC | |
| pcrA | yerF | + | 719370..721589 | COG0210L | pcrA-BAC pcrA-STR | |
| ligA | yerG | + | 721613..723619 | COG0272L | ligA-BAC | |
| yerH | + | 723635..724825 | COG4851R |
| Operon evidence: | Genome analysis |
|---|---|
| Reference: | Petit MA, et al. (1998) |
| Comments: |
| Binding factor |
Regulation | Location | Absolute position | Binding seq.(cis-element) | Experimental evidence |
|---|---|---|---|---|---|
| LexA | Negative | ND | 719330..719353 | ATGATAGAACGTATGTTTTGTATA |
Au N, et al. (2005): GS AR DB |
| Terminator sequence | Absolute position | Position from stop codon | Free energy [kcal/mol] |
Downstream of |
|---|---|---|---|---|
| ATGACTGATAGAAAACCCTTGTGCCATATTGGCACAAGGGTTTTTATGTTACAAT >>>>>>>>>>> <<<<<<<<<<< |
yerH |
|