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Copyright: Human Genome Center, Inst. Med. Sci., Univ. Tokyo; 1999-2008
Contact: Kenta Nakai |
| Regulated Operon: | pta |
| Genes | Synonyms | Direction | Genome position | Function | COG ID | Conserved groups |
|---|---|---|---|---|---|---|
| pta | ywfJ | - | 3865355..3866326 | COG0280C | pta-BAC pta-CLO pta-STA |
| Operon evidence: | Genome analysis |
|---|---|
| Reference: | Shin BS, et al. (1999) |
| Comments: |
| Binding factor |
Regulation | Location | Absolute position | Binding seq.(cis-element) | Experimental evidence |
|---|---|---|---|---|---|
| CcpA | Negative | -70:-35 | 3866398..3866432 | TTTTTTATGAAAGCGCTATAATGAAAGTTGGCTGT |
Presecan-Siedel E, et al. (1999): FT |
| CcpA | Negative | -11:+29 | 3866335..3866374 | ATGCTAGTAAAAGAAAGCGTTTTTGTAACTTTTTGAGGAG |
Presecan-Siedel E, et al. (1999): FT |
| SigA | Promoter | -38:+5 | 3866359..3866401 | CTGTTTGAATTTGATTGGAAGAAGAGTATGCTAGTAAAAGAAA |
Shin BS, et al. (1999): PE |
| Terminator sequence | Absolute position | Position from stop codon | Free energy [kcal/mol] |
Downstream of |
|---|---|---|---|---|
| ACAATGGCAGCTCTCGACCGAGGGCTGCCTTTTTTGCGCTTCTG >>>>>>>>>> <<<<<<<<<< |
pta |
|