Regulated Operon: pucABCDE

Genes
Genes Synonyms Direction Genome position Function COG ID Conserved groups
pucA yurF - 3339945..3340937
COG1975O  
pucB yurE - 3339331..3339948
COG2068R  
pucC yurD - 3338501..3339334
COG1319C  
pucD yurC - 3336263..3338500
COG1529C  
pucE yurB - 3335751..3336272
COG2080C  

Operon evidence: Northern blotting (5.3 kb transcript)
Reference: Yoshida K, et al. (2003)
Comments:


Promoters

Binding
factor
Regulation Location Absolute position Binding seq.(cis-element) Experimental evidence
PucR Negative ND ND ND Beier L, et al. (2001): DB
SigA Promoter -40:+7 3341052..3341098 CTTCGTTTGACTCTTTTTACAAATCCTCTTTCTATGTGTTTCATTTT Beier L, et al. (2002): PE HM

Terminator

Terminator sequence Absolute position Position from stop codon Free energy
[kcal/mol]
Downstream of
CGGGAGTCCGGCTTTTAAAAGCCGGACTTTTTTAGCCTCAGT
     >>>>>>>>>    <<<<<<<<<
3335742..3335763
-12..9
-16.7
pucE

Overview



Upper Region






Copyright: Human Genome Center, Inst. Med. Sci., Univ. Tokyo; 1999-2008
Contact: Kenta Nakai