Regulated Operon: | rapG-phrG |
Genes | Synonyms | Direction | Genome position | Function | COG ID | Conserved groups |
---|---|---|---|---|---|---|
rapG | yycM | + | 4140260..4141357 | |||
phrG | yycL | + | 4141358..4141474 |
Operon evidence: | Northern blotting (1.6 kb transcript); primer extension of phrG |
---|---|
Reference: | McQuade RS, et al. (2001), Ogura M, et al. (2003), BSORF |
Comments: | Internal promoter in front of phrG leads to monocistronic phrG transcripts of 0.6 kb and 0.4 kb. |
Binding factor |
Regulation | Location | Absolute position | Binding seq.(cis-element) | Experimental evidence |
---|---|---|---|---|---|
YvaN | Negative | -55:-27 | 4140160..4140188 | CTTCATATATTGACTAGAGGATTTTACAT |
Hayashi K, et al. (2006): RG DB AR PE GS FT |
SigA | Promoter | -34:+5 | 4140181..4140219 | TTTTACATAAAATAGAAAGAGGTGTTACTATCAGAATAA |
Hayashi K, et al. (2006): PE |
SigH | Promoter | -38:+4 | 4141080..4141121 | TGAAGGAAAAATTGACTGCTGAGCCGAATAGAATATGTGAGG |
McQuade RS, et al. (2001): PE RG DB Ogura M, et al. (2003): DB NB RG |
Terminator sequence | Absolute position | Position from stop codon | Free energy [kcal/mol] |
Downstream of |
---|---|---|---|---|
AAGAATCCTAAAACGGTTTGTAGTTTTAGGATTCTTTCATCTTTTC >>>>>>>>> <<<<<<<<< |
phrG |
|