Regulated Operon: rapH-phrH

Genes
Genes Synonyms Direction Genome position Function COG ID Conserved groups
rapH yzqA + 750959..752089

 

Operon evidence: Northern blotting; genome analysis
Reference: Hayashi K, et al. (2006)
Comments: Sequencing errors resulted in an apparent monocistronic rapH gene, without the associated phrH (Hayashi et al., 2006).

Promoters

Binding
factor		 Regulation Location Absolute position Binding seq.(cis-element) Experimental evidence
ComK Positive -75:-42 750853..750886 AAAAAACAAATTGACAGGATGAAAAAACAATTTC Ogura M, et al. (2002): AR RG HM DB
Hayashi K, et al. (2006): RG DB
YvaN Negative -149:-120 750779..750808 TGTGGTTGACAATAAGTGAATACTATATGA Hayashi K, et al. (2006): RG DB AR PE GS FT SDM
YvaN Negative -76:-46 750852..750882 AAAAAAACAAATTGACAGGATGAAAAAACAA Hayashi K, et al. (2006): RG DB AR PE GS FT SDM
SigA Promoter -42:+4 750886..750931 CTTCCTTCTATATTGTTTTCAAAATTTGGGATTGATAGAATATGAC Hayashi K, et al. (2006): PE

Terminator

Terminator sequence Absolute position Position from stop codon Free energy
[kcal/mol]		 Downstream of
AGAAAGCCCTTAGCTAGGGCTTTTTCTTGCTTTAC
     >>>>>     <<<<<
752241..752255
152..166
-8.8
 rapH

Overview



Upper Region
Copyright: Human Genome Center, Inst. Med. Sci., Univ. Tokyo; 1999-2008
Contact: Kenta Nakai