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Copyright: Human Genome Center, Inst. Med. Sci., Univ. Tokyo; 1999-2008
Contact: Kenta Nakai |
| Regulated Operon: | rapI-phrI |
| Genes | Synonyms | Direction | Genome position | Function | COG ID | Conserved groups |
|---|---|---|---|---|---|---|
| rapI | yddL | + | 547306..548481 | |||
| phrI | + | 548438..548557 |
| Operon evidence: | Primer extension of phrI; genome analysis |
|---|---|
| Reference: | McQuade RS, et al. (2001), Genbank AB001488 |
| Comments: |
| Binding factor |
Regulation | Location | Absolute position | Binding seq.(cis-element) | Experimental evidence |
|---|---|---|---|---|---|
| SigA | Promoter | -56:+14 | 548269..548338 | AAGAATGCATTTTCATATCTGGCTTCGAGAAAAATGTTTGCTGATGTTGAAAATTTTTCGATTGAAGTCG |
McQuade RS, et al. (2001): PE RG |
| SigH | Promoter | -40:+2 | 548355..548396 | ACAAGGAAATTTAATGCTCTCTAATGAATATTATCGTATGAG |
McQuade RS, et al. (2001): PE RG DB |
| Terminator sequence | Absolute position | Position from stop codon | Free energy [kcal/mol] |
Downstream of |
|---|---|---|---|---|
| AAAAAGCTTAATCTTTTTTCGAAGGTTAAGCTTTTTCTTTTATTTA >>>>>>>>>>> <<<<<<<<<<< |
phrI |
|