Regulated Operon: | recA |
Genes | Synonyms | Direction | Genome position | Function | COG ID | Conserved groups |
---|---|---|---|---|---|---|
recA | recE | + | 1764645..1765691 | COG0468L | recA-BAC recA-STA recA-STR |
Operon evidence: | Northern blotting (1.2 kb transcript) |
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Reference: | Cheo DL, et al. (1993) |
Comments: |
Binding factor |
Regulation | Location | Absolute position | Binding seq.(cis-element) | Experimental evidence |
---|---|---|---|---|---|
ComK | Positive | -150:-130 | 1764463..1764483 | GCAAAAATAATATTTTCAGCA |
Hamoen LW, et al. (2001): FT GS Haijema BJ, et al. (1996): FT GS RG DB DP Cheo DL, et al. (1992): DP RG |
ComK | Positive | -120:-95 | 1764493..1764518 | CCTAAGAAAACATGATTTCTCTGATA |
Hamoen LW, et al. (2001): FT GS Haijema BJ, et al. (1996): FT GS RG DB DP Cheo DL, et al. (1992): DP RG |
ComK | Positive | -95:-75 | 1764518..1764538 | ACATTATGATATTTTGATAGG |
Hamoen LW, et al. (2001): FT GS Haijema BJ, et al. (1996): FT GS RG DB DP Cheo DL, et al. (1992): DP RG |
ComK | Positive | -65:-35 | 1764550..1764570 | GAAAAAATCCGAATATGCGTT |
Hamoen LW, et al. (2001): FT GS Haijema BJ, et al. (1996): FT GS RG DB DP Cheo DL, et al. (1992): DP RG |
LexA | Negative | -60:-37 | 1764554..1764577 | AAATCCGAATATGCGTTCGCTTTT |
Raymond-Denise A & Guillen N (1992): DB RG Lovett CM Jr, et al (1993): GS, promoter mutations Haijema BJ, et al. (1996): DB GS DP, Western blot Miller MC, et al. (1996): GS, in-vitro transcription Winterling KW, et al. (1997): GS RG, promoter mutations Winterling KW, et al. (1998): GS FT RG, promoter mutation Hamoen LW, et al. (2001): GS Au N, et al. (2005): GS AR DB Groban ES, et al. (2005): GS, promoter mutations |
SigA | Promoter | -45:+20 | 1764569..1764633 | TTCGCTTTTTTCTTGGCAAATCCCTTCAAACAGGGTATAGTATATGTAGTGGTAACATAAAGGAG |
Cheo DL, et al. (1993): S1 |
Terminator sequence | Absolute position | Position from stop codon | Free energy [kcal/mol] |
Downstream of |
---|---|---|---|---|
AAAAGGCTGAGTGAAAAACTCAGCTTTTTTGTATTTTGC >>>>>>> <<<<<<< |
recA |
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