Regulated Operon: sda

Genes
Genes Synonyms Direction Genome position Function COG ID Conserved groups
sda
+ 2647456..2647614

sda-BAC  

Operon evidence: upstream and downstream genes are on the opposite strand
Reference:
Comments:


Promoters

Binding
factor
Regulation Location Absolute position Binding seq.(cis-element) Experimental evidence
LexA Negative -47:-24 2647325..2647348 ATAACAGAACGATTGTTCTTATAT Au N, et al. (2005): GS
DnaA Negative -146:-41 2647226..2647331 AGGTGTGGATAAATTTACACACACTATCCACTCTTATTACATCACTCTTTAGACAAATTATAAACACGATACTCACAAGTTATCCACTTTTTGGTGTGGATAACAG Burkholder WF, et al. (2001): RG HM DB
SigA Promoter -42:+5 2647330..2647376 AGAACGATTGTTCTTATATGCATTTCATGGTAGATTAAAGATAACTT Burkholder WF, et al. (2001): PE RG

Terminator

Terminator sequence Absolute position Position from stop codon Free energy
[kcal/mol]
Downstream of
ACATATTATTTCCGTATCTTCTTAATAGGAATTTGTCTATTTTTTC
         >>>>>>>      <<<<<<<<<
2647599..2647620
-15..6
-5.1
sda

Overview



Upper Region






Copyright: Human Genome Center, Inst. Med. Sci., Univ. Tokyo; 1999-2008
Contact: Kenta Nakai