Regulated Operon: spoVID-ysxE

Genes
Genes Synonyms Direction Genome position Function COG ID Conserved groups
spoVID
- 2871022..2872749

 
ysxE
- 2869964..2870989
COG3173R  

Operon evidence: transcriptional fusion of ysxE with lacZ; Northern blotting of the downstream valS gene
Reference: Beall B, et al. (1993), Wipat A, et al. (1996), Luo D, et al. (1997)
Comments:


Promoters

Binding
factor
Regulation Location Absolute position Binding seq.(cis-element) Experimental evidence
SigE Promoter -39:+5 2872786..2872829 CCACTCATATTTTCTCCAGTTCATACATACACCTTTAGTGACAT Beall B, et al. (1993): PE RG DB OV

Terminator

Terminator sequence Absolute position Position from stop codon Free energy
[kcal/mol]
Downstream of
CGAAAGAGCTTTTCGTCCTTTTACAGGGATGAAGAGCTCTTTTTTCGTTCTCAG
     >>>>>>>>>>>>>>      <<<<<<<<<<<<<<
2869350..2869383
581..614
-23.5
ysxE

Overview



Upper Region






Copyright: Human Genome Center, Inst. Med. Sci., Univ. Tokyo; 1999-2008
Contact: Kenta Nakai