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Copyright: Human Genome Center, Inst. Med. Sci., Univ. Tokyo; 1999-2008
Contact: Kenta Nakai |
| Regulated Operon: | thyB-dfrA-ypkP |
| Genes | Synonyms | Direction | Genome position | Function | COG ID | Conserved groups |
|---|---|---|---|---|---|---|
| thyB | - | 2297106..2297900 | COG0207F | |||
| dfrA | tmp | - | 2296603..2297109 | COG0262H | dfrA-BAC | |
| ypkP | - | 2295982..2296602 |
| Operon evidence: | Genome analysis |
|---|---|
| Reference: | |
| Comments: |
| Binding factor |
Regulation | Location | Absolute position | Binding seq.(cis-element) | Experimental evidence |
|---|---|---|---|---|---|
| YqzB | Positive | -55:+1 | 2297924..2297981 | ATAAAAAAATCATTTCTGGGTTCAGAAATGATTTTTTATTGTGTTACACTACTAGAAG |
Eckart RA, et al. (2009): RG, FT |
| SigA | Promoter | -55:+10 | 2297915..2297981 | ATAAAAAAATCATTTCTGGGTTCAGAAATGATTTTTTATTGTGTTACACTACTAGAAGACTACTTTT |
Eckart RA, et al. (2009): |
| Terminator sequence | Absolute position | Position from stop codon | Free energy [kcal/mol] |
Downstream of |
|---|---|---|---|---|
| TACGTGCATAAAAAAGCGCAGTCGTGAAGACTGCGCTTTTCTGTTACTGTT >>>>>>>> <<<<<<<< |
ypkP |
|