Regulated Operon: thyB-dfrA-ypkP

Genes
Genes Synonyms Direction Genome position Function COG ID Conserved groups
thyB
- 2297106..2297900
COG0207F  
dfrA tmp - 2296603..2297109
COG0262H dfrA-BAC  
ypkP
- 2295982..2296602

 

Operon evidence: Genome analysis
Reference:
Comments:


Promoters

Binding
factor
Regulation Location Absolute position Binding seq.(cis-element) Experimental evidence
YqzB Positive -55:+1 2297924..2297981 ATAAAAAAATCATTTCTGGGTTCAGAAATGATTTTTTATTGTGTTACACTACTAGAAG Eckart RA, et al. (2009): RG, FT
SigA Promoter -55:+10 2297915..2297981 ATAAAAAAATCATTTCTGGGTTCAGAAATGATTTTTTATTGTGTTACACTACTAGAAGACTACTTTT Eckart RA, et al. (2009):

Terminator

Terminator sequence Absolute position Position from stop codon Free energy
[kcal/mol]
Downstream of
TACGTGCATAAAAAAGCGCAGTCGTGAAGACTGCGCTTTTCTGTTACTGTT
               >>>>>>>>     <<<<<<<<
2295957..2295977
5..25
-17.5
ypkP

Overview



Upper Region






Copyright: Human Genome Center, Inst. Med. Sci., Univ. Tokyo; 1999-2008
Contact: Kenta Nakai