Regulated Operon: ydfJ

Genes
Genes Synonyms Direction Genome position Function COG ID Conserved groups
ydfJ
+ 589717..591891
COG2409R  

Operon evidence: Northern blotting (2.2 kb transcript)
Reference: Serizawa M, et al. (2005)
Comments:

Promoters

Binding
factor		 Regulation Location Absolute position Binding seq.(cis-element) Experimental evidence
YdfI Positive -69:-30 589613..589651 GAAAATTGCCCAAACGTACATGCCCGAATGTACGTTTTT Serizawa M, et al. (2005): HB GS FT
SigA Promoter -50:+14 589631..589694 CATGCCCGAATGTACGTTTTTTTCATTTCATTGTCAACTACAATGAGAAAGAATGTGATCAAGC Serizawa M, et al. (2005): PE

Terminator

Terminator sequence Absolute position Position from stop codon Free energy
[kcal/mol]		 Downstream of
TGTGTAATAGAAAAAGCAGATCTTTTATGATCTGCTCTTTTGCTTATGGTAG
              >>>>>>>>      <<<<<<<<
591899..591920
8..29
-13.7
 ydfJ

Overview



Upper Region
Copyright: Human Genome Center, Inst. Med. Sci., Univ. Tokyo; 1999-2008
Contact: Kenta Nakai