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Copyright: Human Genome Center, Inst. Med. Sci., Univ. Tokyo; 1999-2008
Contact: Kenta Nakai |
| Regulated Operon: | yfmCDEF |
| Genes | Synonyms | Direction | Genome position | Function | COG ID | Conserved groups |
|---|---|---|---|---|---|---|
| yfmC | - | 825787..826734 | COG4594P | |||
| yfmD | - | 824714..825715 | COG0609P | |||
| yfmE | - | 823716..824717 | COG0609P | |||
| yfmF | - | 822903..823703 | COG1120PH |
| Operon evidence: | Northern blotting |
|---|---|
| Reference: | BSORF, Baichoo N, et al. (2002) |
| Comments: | Northern blotting results in BSORF show the following transcripts in this region: yfmDEF, yfmCDEF, yfmC, yfmBC, yfmB |
| Binding factor |
Regulation | Location | Absolute position | Binding seq.(cis-element) | Experimental evidence |
|---|---|---|---|---|---|
| Fur | Negative | ND | 826742..826791 | ATAGTGTTACATGTGATAATGATTCTCATTACTAAATCTGAAAAAAGGAA |
Baichoo N, et al. (2002): FT |
| Terminator sequence | Absolute position | Position from stop codon | Free energy [kcal/mol] |
Downstream of |
|---|---|---|---|---|
| ATGAGAAGCGAGGGGAATCCTTGCTTCTTCGTTTTTGCA >>>>>>> <<<<<<< |
yfmC |
|