Regulated Operon: ykuFG

Genes
Genes Synonyms Direction Genome position Function COG ID Conserved groups
ykuF
+ 1478072..1478836
COG1028IQR  
ykuG
+ 1478441..1480723

 

Operon evidence: Northern blotting (3.5 kb transcript)
Reference: Matsuoka H, et al. (2006)
Comments:

Promoters

Binding
factor		 Regulation Location Absolute position Binding seq.(cis-element) Experimental evidence
YsiA Negative -36:+27 1477998..1478060 TGTGCTGACAGAGGCAGGGATATAATGATAGAATATTATTGAATGAATAATCATTCACAATTG Matsuoka H, et al. (2006): NB DB PE GS FT RG
SigA Promoter -36:+27 1477998..1478060 TGTGCTGACAGAGGCAGGGATATAATGATAGAATATTATTGAATGAATAATCATTCACAATTG Matsuoka H, et al. (2006): PE NB

Terminator

Terminator sequence Absolute position Position from stop codon Free energy
[kcal/mol]		 Downstream of
GAATAAACTGCAAAACAAGCGAACGTTAAAACTGGTCGTTCGCTTGTTTTATTTTCTATTT
               >>>>>>>>>>>>>    <<<<<<<<<<<<<<
1481461..1481491
738..768
-16.9
 ykuG

Overview



Upper Region
Copyright: Human Genome Center, Inst. Med. Sci., Univ. Tokyo; 1999-2008
Contact: Kenta Nakai