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Copyright: Human Genome Center, Inst. Med. Sci., Univ. Tokyo; 1999-2008
Contact: Kenta Nakai |
| Regulated Operon: | ylxS-nusA-ylxRQ-infB-ylxP-rbfA |
| Genes | Synonyms | Direction | Genome position | Function | COG ID | Conserved groups |
|---|---|---|---|---|---|---|
| ylxS | ymxA | + | 1731776..1732246 | COG0779S | ylxS-BAC | |
| nusA | + | 1732281..1733396 | COG0195K | nusA-BAC nusA-CLO nusA-LAB nusA-STA nusA-STR | ||
| ylxR | ymxB | + | 1733410..1733685 | COG2740K | ylxR-BAC ylxR-STR | |
| ylxQ | ymxC | + | 1733687..1733989 | COG1358J | ||
| infB | + | 1734009..1736159 | COG0532J | infB-BAC infB-STR | ||
| ylxP | ymxD | + | 1736156..1736434 | COG1550S | ||
| rbfA | ylxO | + | 1736451..1736804 | COG0858J | rbfA-BAC rbfA-STA x1021-STR |
| Operon evidence: | Northern blotting (5.2 kb transcript) |
|---|---|
| Reference: | Shazand K, et al. (1993) |
| Comments: |
| Binding factor |
Regulation | Location | Absolute position | Binding seq.(cis-element) | Experimental evidence |
|---|---|---|---|---|---|
| SigA | Promoter | -46:+18 | 1731553..1731616 | GCGTATATCCATTTGCAATAAAAATATGGTTATGGTATAGTTTTATTGGAAATGCTAACGATTA |
Shazand K, et al. (1993): PE |
| Terminator sequence | Absolute position | Position from stop codon | Free energy [kcal/mol] |
Downstream of |
|---|---|---|---|---|
| AAAGAGAGGATAGGCGTATATCGTCTGTCCTCTTTCTTCGTTTATAA >>>>>>>>>>> <<<<<<<<<<< |
rbfA |
|