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Copyright: Human Genome Center, Inst. Med. Sci., Univ. Tokyo; 1999-2008
Contact: Kenta Nakai |
| Regulated Operon: | yngABC |
| Genes | Synonyms | Direction | Genome position | Function | COG ID | Conserved groups |
|---|---|---|---|---|---|---|
| yngA | + | 1946249..1946695 | COG2246S | |||
| yngB | + | 1946702..1947595 | COG1210M | |||
| yngC | + | 1947668..1948264 | COG0586S | yngC-BAC |
| Operon evidence: | Co-regulated by YclJ, Genome analysis |
|---|---|
| Reference: | Ogura M, et al. (2010) |
| Comments: |
| Binding factor |
Regulation | Location | Absolute position | Binding seq.(cis-element) | Experimental evidence |
|---|---|---|---|---|---|
| YclJ | Positive | -71:-16 | 1946167..1946222 | ATACCCGCTTTTTCATGTTTTGTTCATATTTTATTAATTGTTTATTCAACACTGTC |
Ogura M, et al. (2010): OV GS FT |
| SigA | Promoter | -50:+10 | 1946188..1946247 | GTTCATATTTTATTAATTGTTTATTCAACACTGTCCGCTATAGTAATCCATATCAACAAA |
Ogura M, et al. (2010): PE |
| Terminator sequence | Absolute position | Position from stop codon | Free energy [kcal/mol] |
Downstream of |
|---|---|---|---|---|
| GATAGCTAGCGGATATGCATAGGGGTGACTGACGCTCCCCTATGCATATTTTTTTACTTGCGA >>>>>>>>>>>>>> <<<<<<<<<<<<<<<< |
yngC |
|