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Copyright: Human Genome Center, Inst. Med. Sci., Univ. Tokyo; 1999-2008
Contact: Kenta Nakai |
| Regulated Operon: | yngJIHGFE |
| Genes | Synonyms | Direction | Genome position | Function | COG ID | Conserved groups |
|---|---|---|---|---|---|---|
| yngJ | - | 1956218..1957360 | COG1960I | x0639-BAC | ||
| yngI | - | 1954525..1956174 | COG0318IQ | yngI-BAC | ||
| yngH | - | 1953181..1954515 | COG4770I | |||
| yngG | - | 1952031..1952930 | COG0119E | mvaB-BAC | ||
| yngF | - | 1951228..1952010 | COG1024I | |||
| yngE | - | 1949682..1951217 | COG4799I | yngE-BAC |
| Operon evidence: | Genome analysis |
|---|---|
| Reference: | Eichenberger P, et al. (2003) |
| Comments: |
| Binding factor |
Regulation | Location | Absolute position | Binding seq.(cis-element) | Experimental evidence |
|---|---|---|---|---|---|
| SigE | Promoter | -38:+11 | 1957373..1957421 | CAGGGAATGATTATAGAACTCGCCTAATAGGATGTTACAAAGATGTGAA |
Eichenberger P, et al. (2003): AR, 5'-RACE-PCR |
| Terminator sequence | Absolute position | Position from stop codon | Free energy [kcal/mol] |
Downstream of |
|---|---|---|---|---|
| ACTTAGGAGCGCAAAAAAAGCGCTCCTTTATATATTTACAA >>>>>>> <<<<<<< |
yngE |
|