 |
Copyright: Human Genome Center, Inst. Med. Sci., Univ. Tokyo; 1999-2008
Contact: Kenta Nakai |
| Regulated Operon: | yrkPQR |
| Genes | Synonyms | Direction | Genome position | Function | COG ID | Conserved groups |
|---|---|---|---|---|---|---|
| yrkP | - | 2704435..2705130 | COG0745TK | |||
| yrkQ | - | 2703150..2704448 | COG0642T | |||
| yrkR | - | 2702688..2703104 | COG3223S |
| Operon evidence: | Genome analysis |
|---|---|
| Reference: | Ogura M, et al. (2008) |
| Comments: |
| Binding factor |
Regulation | Location | Absolute position | Binding seq.(cis-element) | Experimental evidence |
|---|---|---|---|---|---|
| SigA | Promoter | -50:+10 | 2705171..2705230 | TTAAGATTTACGTAGTATCTTATAACGTACTTATTACTATGAACGATATATAGTAAGGAC |
Ogura M, et al. (2008): PE |
| Terminator sequence | Absolute position | Position from stop codon | Free energy [kcal/mol] |
Downstream of |
|---|---|---|---|---|
| AAATGTCCTAATTGTGAAAGGGAACTGGTACAGATTTTTATAACTCTAT >>>>>>>>> <<<<<<<<< |
yrkR |
|