Regulated Operon: ytrABCDEF

Genes
Genes Synonyms Direction Genome position Function COG ID Conserved groups
ytrA
- 3118847..3119239
COG1725K  
ytrB
- 3117976..3118854
COG1131V  
ytrC
- 3116996..3117982

 
ytrD
- 3115989..3116966

 
ytrE
- 3115279..3115974
COG1136V  
ytrF
- 3113979..3115289
COG4591M  

Operon evidence: Northern blotting (5.5 kb transcript)
Reference: Yoshida KI, et al. (2000), Lapidus A, et al. (1997), Genbank AF008220
Comments:


Promoters

Binding
factor
Regulation Location Absolute position Binding seq.(cis-element) Experimental evidence
SigA Promoter -41:+6 3119478..3119524 AAAGGATTGACTTTGTGAGTCAAAGTATTTATTGTATTAAGTGTACT Yoshida KI, et al. (2000): NB PE
YtrA Negative ND ND ND Yoshida KI, et al. (2000): RG NB PE

Terminator

Terminator sequence Absolute position Position from stop codon Free energy
[kcal/mol]
Downstream of
AACGAGCCGGCTGAGACAGCCGGCTTTTTCTATAGCGCA
     >>>>>>>>   <<<<<<<<
3113951..3113969
10..28
-16.8
ytrF

Overview



Upper Region






Copyright: Human Genome Center, Inst. Med. Sci., Univ. Tokyo; 1999-2008
Contact: Kenta Nakai