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Copyright: Human Genome Center, Inst. Med. Sci., Univ. Tokyo; 1999-2008
Contact: Kenta Nakai |
| Regulated Operon: | ywfBCDEFG |
| Genes | Synonyms | Direction | Genome position | Function | COG ID | Conserved groups |
|---|---|---|---|---|---|---|
| ywfB | ipa-80d, ipa-80d | - | 3872588..3873202 | |||
| ywfC | ipa-81d, ipa-81d | - | 3871891..3872598 | |||
| ywfD | ipa-82d, ipa-82d | - | 3871127..3871894 | |||
| ywfE | ipa-83d, ipa-83d | - | 3869690..3871108 | |||
| ywfF | ipa-84d, ipa-84d | - | 3868509..3869693 | |||
| ywfG | ipa-85d | - | 3868287..3869486 | COG0436E |
| Operon evidence: | Northern blotting (6.7 kb transcript) |
|---|---|
| Reference: | Inaoka T, et al. (2003) |
| Comments: |
| Binding factor |
Regulation | Location | Absolute position | Binding seq.(cis-element) | Experimental evidence |
|---|---|---|---|---|---|
| ScoC | Negative | -53:+1 | 3874209..3874262 | ATCAATATTTTCAAAAAACATTGACAGTTCAATTTCCACTGGATAAAATTTACT |
Inaoka T, et al. (2009): PE, GS |
| SigA | Promoter | -53:+10 | 3874200..3874262 | ATCAATATTTTCAAAAAACATTGACAGTTCAATTTCCACTGGATAAAATTTACTTAAAATTTT |
Inaoka T, et al. (2009): PE, GS |
| Terminator sequence | Absolute position | Position from stop codon | Free energy [kcal/mol] |
Downstream of |
|---|---|---|---|---|
| CATTACAAGAAACATCCCGCTAAAAAGCGGGATGTTTTTATATGCTTTT >>>>>>>>> <<<<<<<<< |
ywfG |
|