Regulated Operon: yxjC-scoAB-yxjF

Genes
Genes Synonyms Direction Genome position Function COG ID Conserved groups
yxjC
- 4002716..4004134
COG2610GE  
scoA yxjD - 4001976..4002692
COG1788I  
scoB yxjE - 4001329..4001979
COG2057I  
yxjF
- 4000539..4001312
COG1028IQR  

Operon evidence: Northern blotting (3.8 kb transcript)
Reference: Eichenberger P, et al. (2003), Yoshida K, et al. (2000), BSORF
Comments:

Promoters

Binding
factor		 Regulation Location Absolute position Binding seq.(cis-element) Experimental evidence
CcpA Negative +32:+54 4004156..4004178 TTTTTGTAAACGCTTTCTAGTTC Miwa Y, et al. (2000): RG
SigE Promoter -36:+6 4004204..4004245 ATCGGAATAGTTGGCCCACGCTTCTCGTACATATGGAAAGGG Eichenberger P, et al. (2003): AR, 5'-RACE-PCR

Terminator

Terminator sequence Absolute position Position from stop codon Free energy
[kcal/mol]		 Downstream of
AAAAACACACTTGCTCCGCTAGGGAATCAAGTGTGTTTTTTTCTTTGCTT
     >>>>>>>>>>>>     <<<<<<<<<<<<<
4000500..4000529
10..39
-15.9
 yxjF

Overview



Upper Region
Copyright: Human Genome Center, Inst. Med. Sci., Univ. Tokyo; 1999-2008
Contact: Kenta Nakai