 |
Copyright: Human Genome Center, Inst. Med. Sci., Univ. Tokyo; 1999-2008
Contact: Kenta Nakai |
| Regulated Operon: | yydFGHIJ |
| Genes | Synonyms | Direction | Genome position | Function | COG ID | Conserved groups |
|---|---|---|---|---|---|---|
| yydF | - | 4127498..4127647 | ||||
| yydG | - | 4126481..4127440 | COG0535R | |||
| yydH | - | 4125742..4126500 | ||||
| yydI | - | 4124963..4125592 | COG1120PH | |||
| yydJ | - | 4124220..4124942 |
| Operon evidence: | Northern blotting |
|---|---|
| Reference: | BSORF |
| Comments: |
| Binding factor |
Regulation | Location | Absolute position | Binding seq.(cis-element) | Experimental evidence |
|---|---|---|---|---|---|
| SigA | Promoter | -50:+10 | 4127663..4127722 | TTTAGGTACAATATATTGACATGTATTGAATGATATAGAATAATTGGTTTATATTAGAAA |
Butcher BG, et al. (2007): 5' RACE PCR |
| Rok | Negative | ND | ND | ND |
Albano M, et al. (2005): RG AR DB GS |
| Terminator sequence | Absolute position | Position from stop codon | Free energy [kcal/mol] |
Downstream of |
|---|---|---|---|---|
| AGGGAGCTACTTCACAATGAAGTAGCTTTTTATGTGCACCT >>>>>>>>> <<<<<<<<< |
yydJ |
|