Similar regions between promoters of aadK


                                                                      
                                                                      
sub       ATATATCGTTTTCCTTCTTTTTGTCAATCTCTCATACCAGTTAACATGTCGATAAAGCAG
hal       ...............TCGTTAGGGAATTGGCTCATGGGAGTTTAAATGT........CAT
       -300      -290      -280      -270      -260      -250         


                                                                      
                                                                      
sub       GGGGGATTAAAGTGTGTCAAAGATAGTGTCGTCCCATGGCGGCTCTACAAAAAACTGAAT
hal       GGGAGTTTAAA-TGTACGAAGGGAATTGCCCTC.............ACAAAAAGCGGA..
       -240      -230      -220      -210      -200      -190         


                                                                      
                                                                      
sub       ATTCATGTAGTCCGTCATAGTTGATATCTGATTTTGAGATGTCTTGCATCTTAATATTGA
hal       ............................................................
       -180      -170      -160      -150      -140      -130         


                                                                      
                                                                      
sub       ATGATATATAGGAGAACATCATGTAAAATAAAGCTTAGAAGAATACATCACATTCAAGAG
hal       .TGAAATAAACAAGACCAT--TTCCAAAGAAGGATGAGAAAGAT................
       -120      -110      -100       -90       -80       -70         


                                                                      
                                                                      
sub       TAAAAAAATCTATAAGACGTTTTACAGTTA--GATATTAAGGCTGAAACGGAG---GAAC
hal       .....AAATAAACAAGACCATTTCCAAAGAAGGATGAGAAAGATGAAAAAGCGACTGAAC
        -60       -50       -40         -30       -20       -10       


               
               
sub       ATGTA
hal       AAGT.
             -1


   >     : other CDS		-     : gaps within a similar region
   ]     : terminator		.     : gaps between similar regions
   }     : RNAs			@     : known binding sites
   <,[,{ : opposite direction

About alignment...