Similar regions between promoters of adaA

<<<<<<<<<<<<<<<<<<<<<<<<<<<<<< sub AATAACATCATTGACTTCATGCCATGTCACTTTTTCATTCTCCTTATCTTAAATAATTAT hal ATTAACGTTATTGACCTAA..........CTATTTTTGCCTTGTTATTTTGAAT...... -300 -290 -280 -270 -260 -250 sub AAGAAAACTCACGCTGGTTGAAATTAGTTTATCACATAATCATCTTTACTCATTTTGTTA hal ............................................................ -240 -230 -220 -210 -200 -190 sub TCTTGCTATTACATTCTAACCACCTTATTTTT--TTCTATTTATGAGGTTATAGTGTA-G hal ....GCTTTTCTATTTTTGCCTTGTTATTTTGAATCGAATCAATGAGTGGAGAATGTGTG -180 -170 -160 -150 -140 -130 sub TTATCAAGAATGCTA--AACGGGAGTAGATAAAAATGGCCCAAGATATAAAAAACGCGTG hal ATAAGATGAAAGCGATGAAAAGGAGGAAAT.............................. -120 -110 -100 -90 -80 -70 sub TCGAAAATTTAAATTGGGATTCAATTCAAAGAATTAGATGAGCAT-TGTAAGGAGAGGTG hal ...................TTGAATCGAATCAATGAGTGGAGAATGTGTGATAAGATGAA -60 -50 -40 -30 -20 -10 sub AGATAA hal AG.... -1 > : other CDS - : gaps within a similar region ] : terminator . : gaps between similar regions } : RNAs @ : known binding sites <,[,{ : opposite direction About alignment...