Similar regions between promoters of cgeD
>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> sub TTCTGCTGATACGTCAATCGTCTTCTGAAGGAAATCCATCTGACCTCAGACGCCAGCTTG hal ............................AGAAAATCGATCCGGCAGCAGCAGC......G -300 -290 -280 -270 -260 -250 >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> sub TTTTTGCAAAAGAGCTGGGCGTACCGGTTTCAAAAGTCAATTTGATCAACGGAGATACAC hal TTTTTGC...........................ATTCAATTTGACCAGCTTTGTGTCAA -240 -230 -220 -210 -200 -190 >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> sub TTCAAAATGTCATCGTAAAAGAAGTTCTGACTGATTTGGTTATTTTCCAAAACCCGTTAA hal TCCAACA--CCACAGTTGCAGAAAT--TGGCTGAATT....................... -180 -170 -160 -150 -140 -130 >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> sub ATAACACGAGATCTCATGTTTCACTCTCAAGTGTTGTAAGCTGGGGTGCTTTTTAAATGA hal ............................................................ -120 -110 -100 -90 -80 -70 ]]]]]]]]]]]]]]]]]]]]] sub TGACAGAGGCTCTGCTTGCTGCGGAGCCGTTTTTATGTTTGACGGCGGGAGGCGGTATAG hal ...........................CGTTGGGCTTTTTGAGCGGGGTATGAGATACA. -60 -50 -40 -30 -20 -10 -1 > : other CDS - : gaps within a similar region ] : terminator . : gaps between similar regions } : RNAs @ : known binding sites <,[,{ : opposite direction About alignment...