Similar regions between promoters of csgA
>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> sub TTTACAAACTATTTGACGATTGCTTTCTTGCTGATGGTTCTGGTTGGCATGTGGTTTAAC ste .TTTCAAACAATTGAACGA.....................TGTTTGCCATTTGCTT.... -300 -290 -280 -270 -260 -250 >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> sub GATGATACTCGTATCTCCCTGATTGTAGGCGTGATTTTCTTAGCGCTTGTGGTCATTAGT ste ..............CCCCCTTATTGTTTGC--CATTTGCTT................... -240 -230 -220 -210 -200 -190 >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> sub TATTATGTGTTTGGGATTGGCAAACGCACGCAGGCCAATTTGACAAAAAGCGAACAAGCA ste .......TGTTTGCCATTTGC.........CTGCCCGATTTCA-AACAATTGAACGACCG -180 -170 -160 -150 -140 -130 >>>>>>>>> ]]]]]]]]]]]]]]]]]]]] sub GCTGAATAACGATAAAAAAGAGACATTCACGGATGTCTCTTTTTTTATTTTTCGCGTATG ste ACTGATCAACGA.....................TGTCTCTTTTTTT.............. -120 -110 -100 -90 -80 -70 sub GATTTTCCCTATTTTAGCAAGCTATAGGGTAAAGATAGCAGAAGGAAAGGTGTTCATAAA ste .................CAAGCTA--CGCTACTGATAGGAGGTGCAAA............ -60 -50 -40 -30 -20 -10 -1 > : other CDS - : gaps within a similar region ] : terminator . : gaps between similar regions } : RNAs @ : known binding sites <,[,{ : opposite direction About alignment...