Similar regions between promoters of glnR

>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> sub GCCTGGATACGAGGATGATGTCATTATGGCAGCAGGGACGTTTATTCAAGGAGCAAGCAT ste GCCCGGCTATGAAGACAAAGTGATCATGGCCGCCGGCACGTTCGTCCAAGGGGCAAGCAT -300 -290 -280 -270 -260 -250 >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> sub CGAATTATCAGCTGATGGCCCTATCCGCCCGCCGTATGTAGCGTATGTTCAGGGAGGATT ste TGAGTTGACGGCCGACGGGCCGTTGCGCCCCCCGTATGTCGCGTATGTGCAAGGCGGATT -240 -230 -220 -210 -200 -190 >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> sub AACCTATTCGCATGTGAAGAATGCCATATGCAGTGCAGTGGATTCATTGATGCAAAAGCA ste GACGTATTCGCATGTGAAAATCGCCGTCTGTTCCGCCATTCAGCGTTTGCTTGAACAGCG -180 -170 -160 -150 -140 -130 @ @@@@@@@@@@@@@@@@ >>>>>>>>>> sub ATTAATTTAAATTTTTTAAAAATTTCTCCTGGATTTGAT-GTTAAGAATCCTTACATCGT ste GTTGATTT.....................TTGATTTGTTTGTGAGGAAACGTCACGTTTC -120 -110 -100 -90 -80 -70 @@@@@@@@@@@@@@@@@ sub ATTGACACATAATATAACATCACCTATAATGAAACTAAGTTAAGAAAAG-GAGGA--AAT ste ATTGACTCATTTCCTAACAT----TATGGTAAAATAAAGGTATCAAAAGCGAGGAGGAAT -60 -50 -40 -30 -20 -10 sub TGAG ste TG.. -1 > : other CDS - : gaps within a similar region ] : terminator . : gaps between similar regions } : RNAs @ : known binding sites <,[,{ : opposite direction About alignment...