Similar regions between promoters of glpF
>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> sub GGGGTTTCATCCGTACGGAAGAGGATGTAGAGCAGGCATTGAAAGCGGGGGCTGTAGCTG hal .........TTCGCACAAGGGATGAAGTGGATGCTGCGCTTAGTTCTGGGGCGGTTGCCG -300 -290 -280 -270 -260 -250 >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> >>>>>>>>>>>>>>>>>>> sub TCACAACATCTAATACCAAATTGTGGAAAAAAT--------ATGAAAACTTTTTGACGGA hal TGTCCACTTCGAAAAAGGAATTGTGGAGATAATGTAGAAGAATGCAAAAATTTTGCAAAA -240 -230 -220 -210 -200 -190 >>>>>>> >>> sub AAGTGAT--TGACACCGCTTTCATGCAC-TGATACAATTGCACTAGGTTAATACAT-TGT hal AACTTTTGTTGACAGCGTTTACAAACATGTGATTAAATAAAGGCAAGTTAATAATCCTGT -180 -170 -160 -150 -140 ]]]]]]]]]]]]]]]]]]]]]]]]]]]] sub GATGGAGAACTCGGAGACCACAGCAGCTCTTTACGGCAAATGTTTATGCACCCGTAAAGC hal GACGGAGATTT-GGAGATCA........................................ -130 -120 -110 -100 -90 -80 ]]]]]]]] sub GGTTTGTTGTGGTTTTTTTATTCTCTTCTTCTCTATCATGCTTTTTAATCGTGACTTTAG hal .............TTTGTTGATCTCTTTTTTTCG-TCATCATTTTTTA............ -70 -60 -50 -40 -30 -20 sub GAGGAATGTGCT hal ............ -10 -1 > : other CDS - : gaps within a similar region ] : terminator . : gaps between similar regions } : RNAs @ : known binding sites <,[,{ : opposite direction About alignment...