Similar regions between promoters of mtlA
>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> sub ACGTGCCGATGGCTGTATTTGCGCTTGTGTGCGCGTATCCCGTTTTTATTGTGAGTGAGC hal ............................................TTTATTATGA...... -300 -290 -280 -270 -260 -250 >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>] sub GGATGATTGCAAAGTACGTGATTCAAAATGGCAACATCATTTATAGAGGAAAGAGAAAAG hal ........................ATAAGGACACTCACCTTTATGGACTCTAGAGAGAAG -240 -230 -220 -210 -200 -190 ]]] ]]]]]]]]]]]]]]]] sub GCT--CCTGAAACCAGGAGCCTTTTTATTT-TTAAAAAATTGTCACAGTCATG--TGCCA hal GGAAGCCTATCACTAGG--CTTATCGAGTAATTTAAACTTTGTCACCCTTCAGAATGACG -180 -170 -160 -150 -140 -130 sub AAGTCCTCTTTACTTTCAATTGTATAGGGACTGTAAGCGTTTTAACATAGAGTCAAAGGG hal AAAGTGTGTTTTGATTTCGTTGTTTACAAGATGAGAGCGCTTTATTATGAACGTAAAGGG -120 -110 -100 -90 -80 -70 sub AAGCATCATTCTCTGAACATATTTTTGTATCTTACAGCGACAAACAAAACAGGGAGGGTT hal ............................................................ -60 -50 -40 -30 -20 -10 sub TATAT hal ..... -1 > : other CDS - : gaps within a similar region ] : terminator . : gaps between similar regions } : RNAs @ : known binding sites <,[,{ : opposite direction About alignment...