Similar regions between promoters of mutT
>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> sub GTCTCGTGACGCTTCACTCCTCTTACAGAAGCCTTGTCCATCCGTTTGATAAGTTTTTGG hal ................................................ATGAATTTTTAC -300 -290 -280 -270 -260 -250 >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> sub AAACAGTTGAGGCAAAAGCGAAGAAGGAGCAGTTTTCCGTTATGGTGCTGTTTCCGCAAT hal AAACA--TG-GACAGATGAGCAGGAGGAGGA............................T -240 -230 -220 -210 -200 -190 >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> sub TTATAACGAAAAAACGCTGGCACACCATCCTTCACAACCAATCGGCCTTCCTCCTCAGAG hal TTTTTACGAATAACCG............................................ -180 -170 -160 -150 -140 -130 >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> sub TCCGGCTGTTCTGGAAAAAGGACATAATGGTTGCCACACTGCCGTATCATTTTAAAAAGT hal ............................................................ -120 -110 -100 -90 -80 -70 >> ]]]]]]]]]]]]]]]]]]]]]]]] sub AAAGCTCTAGGACCAAGGGAATCACCTTGGTCCTTTTTAGCGGGAAAAGGAGGTATGGGG hal ....................................TGAGCAGGAGGAGGATCTA..... -60 -50 -40 -30 -20 -10 -1 > : other CDS - : gaps within a similar region ] : terminator . : gaps between similar regions } : RNAs @ : known binding sites <,[,{ : opposite direction About alignment...